Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8123 and Atu8124 are separated by 164 nucleotides Atu8124 and Atu0443 are separated by 498 nucleotides
Atu8123: Atu8123 - hypothetical protein, at 437,097 to 437,330
Atu8123
Atu8124: Atu8124 - hypothetical protein, at 437,495 to 437,917
Atu8124
Atu0443: Atu0443 - putative phage repressor, at 438,416 to 439,111
Atu0443
Position (kb) 437
438 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 436.522 kb on + strand at 436.530 kb on - strand at 436.604 kb on - strand at 436.764 kb on - strand at 436.799 kb on + strand at 436.814 kb on + strand at 436.898 kb on - strand at 436.981 kb on + strand at 436.986 kb on + strand at 436.989 kb on - strand at 436.997 kb on - strand at 436.999 kb on + strand at 437.080 kb on - strand at 437.087 kb on - strand at 437.129 kb on + strand, within Atu8123 at 437.214 kb on + strand, within Atu8123 at 437.214 kb on + strand, within Atu8123 at 437.266 kb on - strand, within Atu8123 at 437.387 kb on + strand at 437.493 kb on + strand at 437.501 kb on - strand at 437.631 kb on + strand, within Atu8124 at 437.631 kb on + strand, within Atu8124 at 437.631 kb on + strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.639 kb on - strand, within Atu8124 at 437.671 kb on - strand, within Atu8124 at 437.751 kb on + strand, within Atu8124 at 437.754 kb on - strand, within Atu8124 at 437.759 kb on - strand, within Atu8124 at 437.920 kb on + strand at 437.922 kb on - strand at 437.922 kb on - strand at 437.928 kb on - strand at 438.016 kb on + strand at 438.269 kb on + strand at 438.269 kb on + strand at 438.273 kb on + strand at 438.277 kb on - strand at 438.277 kb on - strand at 438.281 kb on - strand at 438.305 kb on + strand at 438.313 kb on - strand at 438.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 436,522 + -1.9 436,530 - -1.1 436,604 - -1.5 436,764 - -0.5 436,799 + +1.1 436,814 + -0.7 436,898 - +0.3 436,981 + -1.6 436,986 + -0.3 436,989 - -0.3 436,997 - -0.0 436,999 + +0.7 437,080 - +0.3 437,087 - +0.1 437,129 + Atu8123 0.14 -0.1 437,214 + Atu8123 0.50 +0.1 437,214 + Atu8123 0.50 -1.5 437,266 - Atu8123 0.72 -0.0 437,387 + -1.7 437,493 + -3.4 437,501 - +0.7 437,631 + Atu8124 0.32 +0.7 437,631 + Atu8124 0.32 -0.4 437,631 + Atu8124 0.32 -0.2 437,639 - Atu8124 0.34 -4.1 437,639 - Atu8124 0.34 -1.7 437,639 - Atu8124 0.34 -2.7 437,639 - Atu8124 0.34 +0.4 437,639 - Atu8124 0.34 +0.3 437,671 - Atu8124 0.42 -1.8 437,751 + Atu8124 0.61 -2.6 437,754 - Atu8124 0.61 -0.7 437,759 - Atu8124 0.62 -1.0 437,920 + -0.0 437,922 - +1.3 437,922 - -0.5 437,928 - -1.9 438,016 + +0.1 438,269 + -0.7 438,269 + -0.2 438,273 + -0.9 438,277 - +1.7 438,277 - -2.5 438,281 - -1.3 438,305 + -0.4 438,313 - -0.6 438,401 - +0.8
Or see this region's nucleotide sequence