Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5165 and Atu5166 overlap by 1 nucleotides Atu5166 and Atu5167 are separated by 234 nucleotides
Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208
Atu5165
Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906
Atu5166
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Position (kb) 164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 163.253 kb on - strand, within Atu5165 at 163.253 kb on - strand, within Atu5165 at 163.284 kb on + strand, within Atu5165 at 163.374 kb on + strand, within Atu5165 at 163.390 kb on - strand, within Atu5165 at 163.472 kb on + strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.613 kb on + strand, within Atu5165 at 163.621 kb on - strand, within Atu5165 at 163.631 kb on + strand, within Atu5165 at 163.675 kb on + strand, within Atu5165 at 163.678 kb on + strand, within Atu5165 at 163.690 kb on + strand, within Atu5165 at 163.802 kb on - strand, within Atu5165 at 163.861 kb on + strand, within Atu5165 at 163.909 kb on - strand, within Atu5165 at 164.038 kb on + strand at 164.125 kb on - strand at 164.156 kb on - strand at 164.171 kb on + strand at 164.237 kb on + strand at 164.245 kb on - strand at 164.249 kb on + strand at 164.321 kb on + strand, within Atu5166 at 164.339 kb on + strand, within Atu5166 at 164.439 kb on + strand, within Atu5166 at 164.664 kb on + strand, within Atu5166 at 164.672 kb on - strand, within Atu5166 at 164.735 kb on - strand, within Atu5166 at 164.807 kb on + strand, within Atu5166 at 164.826 kb on + strand, within Atu5166 at 164.903 kb on + strand at 164.903 kb on + strand at 164.915 kb on - strand at 164.946 kb on - strand at 164.970 kb on + strand at 165.090 kb on + strand at 165.122 kb on + strand at 165.150 kb on + strand at 165.173 kb on + strand at 165.253 kb on + strand, within Atu5167 at 165.272 kb on + strand, within Atu5167 at 165.273 kb on + strand, within Atu5167 at 165.323 kb on - strand, within Atu5167 at 165.482 kb on - strand, within Atu5167 at 165.498 kb on + strand, within Atu5167 at 165.714 kb on - strand, within Atu5167 at 165.755 kb on + strand, within Atu5167 at 165.876 kb on + strand, within Atu5167
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 163,253 - Atu5165 0.58 -1.3 163,253 - Atu5165 0.58 -1.8 163,284 + Atu5165 0.59 +0.2 163,374 + Atu5165 0.63 -1.4 163,390 - Atu5165 0.64 -0.1 163,472 + Atu5165 0.68 -0.6 163,551 - Atu5165 0.71 -2.6 163,551 - Atu5165 0.71 +0.6 163,613 + Atu5165 0.74 -0.0 163,621 - Atu5165 0.74 -2.5 163,631 + Atu5165 0.75 -0.4 163,675 + Atu5165 0.77 -0.2 163,678 + Atu5165 0.77 +0.7 163,690 + Atu5165 0.77 +0.2 163,802 - Atu5165 0.82 +0.2 163,861 + Atu5165 0.85 -0.5 163,909 - Atu5165 0.87 +0.5 164,038 + +0.9 164,125 - -3.7 164,156 - +0.1 164,171 + -0.1 164,237 + +0.6 164,245 - +1.4 164,249 + -0.5 164,321 + Atu5166 0.16 -0.8 164,339 + Atu5166 0.19 -1.9 164,439 + Atu5166 0.33 +0.3 164,664 + Atu5166 0.65 +1.7 164,672 - Atu5166 0.66 +0.4 164,735 - Atu5166 0.75 -0.1 164,807 + Atu5166 0.86 -0.8 164,826 + Atu5166 0.88 -0.3 164,903 + -1.4 164,903 + +0.4 164,915 - +0.9 164,946 - -2.1 164,970 + +1.6 165,090 + +0.2 165,122 + +0.3 165,150 + +7.8 165,173 + -2.3 165,253 + Atu5167 0.12 +0.2 165,272 + Atu5167 0.14 -2.5 165,273 + Atu5167 0.14 +0.2 165,323 - Atu5167 0.19 -0.5 165,482 - Atu5167 0.36 +0.5 165,498 + Atu5167 0.38 -0.5 165,714 - Atu5167 0.61 -1.5 165,755 + Atu5167 0.66 -1.2 165,876 + Atu5167 0.79 +2.3
Or see this region's nucleotide sequence