Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5063 and Atu5064 are separated by 245 nucleotides Atu5064 and Atu5065 are separated by 132 nucleotides Atu5065 and Atu5066 are separated by 72 nucleotides
Atu5063: Atu5063 - RpiR family transcriptional regulator, at 61,763 to 62,641
Atu5063
Atu5064: Atu5064 - MarR family transcriptional regulator, at 62,887 to 63,339
Atu5064
Atu5065: Atu5065 - non-heme chloroperoxidase, at 63,472 to 64,293
Atu5065
Atu5066: Atu5066 - hypothetical protein, at 64,366 to 65,133
Atu5066
Position (kb) 63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 62.493 kb on + strand, within Atu5063 at 62.511 kb on + strand, within Atu5063 at 62.546 kb on + strand, within Atu5063 at 62.625 kb on + strand at 62.625 kb on + strand at 62.663 kb on - strand at 62.666 kb on - strand at 62.699 kb on + strand at 62.718 kb on - strand at 62.733 kb on - strand at 62.745 kb on + strand at 62.754 kb on - strand at 62.768 kb on + strand at 62.776 kb on - strand at 62.789 kb on + strand at 62.789 kb on + strand at 62.789 kb on + strand at 62.826 kb on - strand at 62.843 kb on + strand at 62.848 kb on - strand at 62.967 kb on + strand, within Atu5064 at 62.967 kb on + strand, within Atu5064 at 63.039 kb on - strand, within Atu5064 at 63.068 kb on - strand, within Atu5064 at 63.211 kb on - strand, within Atu5064 at 63.211 kb on - strand, within Atu5064 at 63.216 kb on - strand, within Atu5064 at 63.216 kb on - strand, within Atu5064 at 63.244 kb on - strand, within Atu5064 at 63.244 kb on - strand, within Atu5064 at 63.244 kb on - strand, within Atu5064 at 63.244 kb on - strand, within Atu5064 at 63.244 kb on - strand, within Atu5064 at 63.246 kb on + strand, within Atu5064 at 63.254 kb on - strand, within Atu5064 at 63.271 kb on - strand, within Atu5064 at 63.496 kb on - strand at 63.516 kb on + strand at 63.535 kb on - strand at 63.636 kb on + strand, within Atu5065 at 63.655 kb on + strand, within Atu5065 at 63.663 kb on - strand, within Atu5065 at 63.663 kb on - strand, within Atu5065 at 63.706 kb on + strand, within Atu5065 at 63.714 kb on - strand, within Atu5065 at 63.867 kb on + strand, within Atu5065 at 63.904 kb on + strand, within Atu5065 at 64.019 kb on + strand, within Atu5065 at 64.019 kb on + strand, within Atu5065 at 64.024 kb on + strand, within Atu5065 at 64.027 kb on - strand, within Atu5065 at 64.027 kb on - strand, within Atu5065 at 64.027 kb on - strand, within Atu5065 at 64.088 kb on - strand, within Atu5065 at 64.111 kb on - strand, within Atu5065 at 64.111 kb on - strand, within Atu5065 at 64.127 kb on + strand, within Atu5065 at 64.175 kb on + strand, within Atu5065 at 64.180 kb on + strand, within Atu5065 at 64.193 kb on - strand, within Atu5065 at 64.236 kb on + strand at 64.236 kb on + strand at 64.236 kb on + strand at 64.257 kb on + strand at 64.277 kb on + strand at 64.277 kb on + strand at 64.277 kb on + strand at 64.278 kb on - strand at 64.290 kb on - strand at 64.295 kb on - strand at 64.381 kb on - strand at 64.465 kb on + strand, within Atu5066 at 64.473 kb on - strand, within Atu5066 at 64.473 kb on - strand, within Atu5066 at 64.478 kb on + strand, within Atu5066 at 64.478 kb on + strand, within Atu5066 at 64.491 kb on - strand, within Atu5066 at 64.493 kb on + strand, within Atu5066 at 64.501 kb on - strand, within Atu5066 at 64.507 kb on + strand, within Atu5066 at 64.507 kb on + strand, within Atu5066 at 64.515 kb on - strand, within Atu5066 at 64.515 kb on - strand, within Atu5066 at 64.547 kb on - strand, within Atu5066 at 64.547 kb on - strand, within Atu5066 at 64.677 kb on + strand, within Atu5066 at 64.721 kb on - strand, within Atu5066 at 64.738 kb on - strand, within Atu5066 at 64.811 kb on - strand, within Atu5066 at 64.813 kb on - strand, within Atu5066 at 64.815 kb on + strand, within Atu5066 at 64.869 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.902 kb on + strand, within Atu5066 at 64.910 kb on - strand, within Atu5066 at 64.922 kb on - strand, within Atu5066 at 64.962 kb on + strand, within Atu5066 at 65.144 kb on + strand at 65.180 kb on - strand at 65.209 kb on + strand at 65.216 kb on - strand at 65.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 62,493 + Atu5063 0.83 -2.4 62,511 + Atu5063 0.85 +0.3 62,546 + Atu5063 0.89 -0.0 62,625 + +0.2 62,625 + -2.0 62,663 - +0.6 62,666 - -1.7 62,699 + -0.2 62,718 - -2.9 62,733 - -1.3 62,745 + +1.4 62,754 - +0.3 62,768 + +1.4 62,776 - +0.3 62,789 + -1.9 62,789 + +1.0 62,789 + -2.6 62,826 - +0.2 62,843 + -0.8 62,848 - -1.7 62,967 + Atu5064 0.18 -0.2 62,967 + Atu5064 0.18 -0.6 63,039 - Atu5064 0.34 -2.5 63,068 - Atu5064 0.40 -1.0 63,211 - Atu5064 0.72 -1.1 63,211 - Atu5064 0.72 +1.2 63,216 - Atu5064 0.73 +0.2 63,216 - Atu5064 0.73 -0.3 63,244 - Atu5064 0.79 -2.2 63,244 - Atu5064 0.79 -1.0 63,244 - Atu5064 0.79 +0.6 63,244 - Atu5064 0.79 -0.7 63,244 - Atu5064 0.79 -1.1 63,246 + Atu5064 0.79 +0.6 63,254 - Atu5064 0.81 -2.1 63,271 - Atu5064 0.85 +0.0 63,496 - +0.7 63,516 + +0.4 63,535 - -0.7 63,636 + Atu5065 0.20 -2.1 63,655 + Atu5065 0.22 -0.3 63,663 - Atu5065 0.23 -0.3 63,663 - Atu5065 0.23 -2.0 63,706 + Atu5065 0.28 -2.9 63,714 - Atu5065 0.29 +0.3 63,867 + Atu5065 0.48 +0.5 63,904 + Atu5065 0.53 -1.3 64,019 + Atu5065 0.67 -1.4 64,019 + Atu5065 0.67 +0.2 64,024 + Atu5065 0.67 -2.0 64,027 - Atu5065 0.68 -2.2 64,027 - Atu5065 0.68 -0.6 64,027 - Atu5065 0.68 -2.3 64,088 - Atu5065 0.75 -0.5 64,111 - Atu5065 0.78 -0.3 64,111 - Atu5065 0.78 -0.1 64,127 + Atu5065 0.80 +0.1 64,175 + Atu5065 0.86 +1.6 64,180 + Atu5065 0.86 -4.1 64,193 - Atu5065 0.88 -2.6 64,236 + -0.7 64,236 + -0.2 64,236 + -0.4 64,257 + -1.8 64,277 + -0.6 64,277 + +0.2 64,277 + -0.1 64,278 - +0.5 64,290 - +2.0 64,295 - +0.3 64,381 - -0.3 64,465 + Atu5066 0.13 +1.3 64,473 - Atu5066 0.14 +0.9 64,473 - Atu5066 0.14 -0.5 64,478 + Atu5066 0.15 +1.0 64,478 + Atu5066 0.15 -2.8 64,491 - Atu5066 0.16 -2.0 64,493 + Atu5066 0.17 -0.7 64,501 - Atu5066 0.18 +1.1 64,507 + Atu5066 0.18 -2.3 64,507 + Atu5066 0.18 +0.3 64,515 - Atu5066 0.19 +0.5 64,515 - Atu5066 0.19 +0.7 64,547 - Atu5066 0.24 +0.2 64,547 - Atu5066 0.24 -1.5 64,677 + Atu5066 0.40 -1.0 64,721 - Atu5066 0.46 -0.3 64,738 - Atu5066 0.48 -2.2 64,811 - Atu5066 0.58 +1.5 64,813 - Atu5066 0.58 -1.2 64,815 + Atu5066 0.58 -1.4 64,869 + Atu5066 0.65 +0.7 64,902 + Atu5066 0.70 +0.7 64,902 + Atu5066 0.70 -0.2 64,902 + Atu5066 0.70 +0.5 64,902 + Atu5066 0.70 -1.0 64,902 + Atu5066 0.70 -1.7 64,910 - Atu5066 0.71 +0.1 64,922 - Atu5066 0.72 -0.9 64,962 + Atu5066 0.78 -0.3 65,144 + -0.1 65,180 - +1.4 65,209 + +0.0 65,216 - -1.0 65,217 - +1.6
Or see this region's nucleotide sequence