Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5018 and Atu5019 are separated by 25 nucleotides Atu5019 and Atu5020 overlap by 4 nucleotides Atu5020 and Atu5021 overlap by 4 nucleotides Atu5021 and Atu5022 overlap by 1 nucleotides
Atu5018: Atu5018 - hypothetical protein, at 18,384 to 19,208
Atu5018
Atu5019: Atu5019 - hypothetical protein, at 19,234 to 20,004
Atu5019
Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335
Atu5020
Atu5021: Atu5021 - hypothetical protein, at 21,332 to 22,228
Atu5021
Atu5022: Atu5022 - hypothetical protein, at 22,228 to 24,126
Atu5022
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.013 kb on + strand, within Atu5018 at 19.061 kb on - strand, within Atu5018 at 19.074 kb on + strand, within Atu5018 at 19.162 kb on + strand at 19.170 kb on - strand at 19.293 kb on - strand at 19.330 kb on - strand, within Atu5019 at 19.467 kb on + strand, within Atu5019 at 19.468 kb on + strand, within Atu5019 at 19.494 kb on + strand, within Atu5019 at 19.631 kb on - strand, within Atu5019 at 19.653 kb on - strand, within Atu5019 at 19.653 kb on - strand, within Atu5019 at 19.655 kb on + strand, within Atu5019 at 19.665 kb on + strand, within Atu5019 at 19.673 kb on - strand, within Atu5019 at 19.673 kb on - strand, within Atu5019 at 19.703 kb on + strand, within Atu5019 at 19.711 kb on - strand, within Atu5019 at 19.718 kb on - strand, within Atu5019 at 19.723 kb on + strand, within Atu5019 at 19.739 kb on - strand, within Atu5019 at 19.784 kb on - strand, within Atu5019 at 19.849 kb on - strand, within Atu5019 at 19.871 kb on + strand, within Atu5019 at 19.912 kb on - strand, within Atu5019 at 19.936 kb on - strand at 19.970 kb on + strand at 19.977 kb on + strand at 19.982 kb on + strand at 19.990 kb on - strand at 19.992 kb on + strand at 20.039 kb on + strand at 20.047 kb on - strand at 20.047 kb on - strand at 20.047 kb on - strand at 20.098 kb on + strand at 20.106 kb on - strand at 20.124 kb on + strand at 20.158 kb on + strand, within Atu5020 at 20.158 kb on + strand, within Atu5020 at 20.166 kb on - strand, within Atu5020 at 20.186 kb on - strand, within Atu5020 at 20.262 kb on + strand, within Atu5020 at 20.262 kb on + strand, within Atu5020 at 20.290 kb on - strand, within Atu5020 at 20.312 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.352 kb on - strand, within Atu5020 at 20.352 kb on - strand, within Atu5020 at 20.352 kb on - strand, within Atu5020 at 20.403 kb on - strand, within Atu5020 at 20.428 kb on + strand, within Atu5020 at 20.429 kb on - strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.477 kb on + strand, within Atu5020 at 20.485 kb on - strand, within Atu5020 at 20.485 kb on - strand, within Atu5020 at 20.499 kb on - strand, within Atu5020 at 20.523 kb on - strand, within Atu5020 at 20.538 kb on + strand, within Atu5020 at 20.546 kb on - strand, within Atu5020 at 20.546 kb on - strand, within Atu5020 at 20.637 kb on + strand, within Atu5020 at 20.637 kb on + strand, within Atu5020 at 20.637 kb on + strand, within Atu5020 at 20.652 kb on + strand, within Atu5020 at 20.660 kb on - strand, within Atu5020 at 20.675 kb on + strand, within Atu5020 at 20.683 kb on - strand, within Atu5020 at 20.683 kb on - strand, within Atu5020 at 20.694 kb on + strand, within Atu5020 at 20.714 kb on + strand, within Atu5020 at 20.722 kb on + strand, within Atu5020 at 20.722 kb on - strand, within Atu5020 at 20.724 kb on + strand, within Atu5020 at 20.811 kb on - strand, within Atu5020 at 20.823 kb on + strand, within Atu5020 at 20.831 kb on - strand, within Atu5020 at 20.832 kb on - strand, within Atu5020 at 20.863 kb on + strand, within Atu5020 at 20.883 kb on - strand, within Atu5020 at 20.889 kb on + strand, within Atu5020 at 20.895 kb on - strand, within Atu5020 at 20.941 kb on - strand, within Atu5020 at 20.969 kb on + strand, within Atu5020 at 21.064 kb on - strand, within Atu5020 at 21.171 kb on + strand, within Atu5020 at 21.173 kb on - strand, within Atu5020 at 21.193 kb on - strand, within Atu5020 at 21.230 kb on + strand at 21.233 kb on - strand at 21.250 kb on + strand at 21.308 kb on + strand at 21.313 kb on + strand at 21.316 kb on - strand at 21.316 kb on - strand at 21.410 kb on + strand at 21.418 kb on - strand at 21.434 kb on - strand, within Atu5021 at 21.458 kb on - strand, within Atu5021 at 21.497 kb on + strand, within Atu5021 at 21.505 kb on - strand, within Atu5021 at 21.507 kb on + strand, within Atu5021 at 21.520 kb on - strand, within Atu5021 at 21.520 kb on - strand, within Atu5021 at 21.557 kb on - strand, within Atu5021 at 21.619 kb on + strand, within Atu5021 at 21.652 kb on + strand, within Atu5021 at 21.652 kb on + strand, within Atu5021 at 21.652 kb on + strand, within Atu5021 at 21.652 kb on + strand, within Atu5021 at 21.660 kb on - strand, within Atu5021 at 21.660 kb on - strand, within Atu5021 at 21.684 kb on - strand, within Atu5021 at 21.707 kb on + strand, within Atu5021 at 21.725 kb on - strand, within Atu5021 at 21.766 kb on - strand, within Atu5021 at 21.843 kb on - strand, within Atu5021 at 21.879 kb on - strand, within Atu5021 at 22.128 kb on - strand, within Atu5021 at 22.130 kb on - strand, within Atu5021 at 22.167 kb on + strand at 22.252 kb on + strand at 22.252 kb on + strand at 22.260 kb on - strand at 22.260 kb on - strand at 22.260 kb on - strand at 22.260 kb on - strand at 22.275 kb on + strand at 22.281 kb on + strand at 22.299 kb on + strand at 22.299 kb on + strand at 22.321 kb on + strand at 22.332 kb on + strand at 22.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 19,013 + Atu5018 0.76 -1.8 19,061 - Atu5018 0.82 +0.6 19,074 + Atu5018 0.84 -1.9 19,162 + -1.3 19,170 - -2.1 19,293 - +0.2 19,330 - Atu5019 0.12 +0.2 19,467 + Atu5019 0.30 +1.6 19,468 + Atu5019 0.30 +1.4 19,494 + Atu5019 0.34 -2.4 19,631 - Atu5019 0.51 +0.1 19,653 - Atu5019 0.54 +2.7 19,653 - Atu5019 0.54 -0.8 19,655 + Atu5019 0.55 -3.7 19,665 + Atu5019 0.56 +0.0 19,673 - Atu5019 0.57 +1.3 19,673 - Atu5019 0.57 +2.7 19,703 + Atu5019 0.61 +0.6 19,711 - Atu5019 0.62 -1.0 19,718 - Atu5019 0.63 -0.4 19,723 + Atu5019 0.63 -2.1 19,739 - Atu5019 0.65 -1.4 19,784 - Atu5019 0.71 +0.4 19,849 - Atu5019 0.80 -2.4 19,871 + Atu5019 0.83 -1.8 19,912 - Atu5019 0.88 +1.0 19,936 - +0.9 19,970 + +0.8 19,977 + -2.3 19,982 + +0.0 19,990 - -0.2 19,992 + +0.6 20,039 + -0.1 20,047 - +1.6 20,047 - -1.9 20,047 - -0.9 20,098 + +1.0 20,106 - +0.9 20,124 + +2.0 20,158 + Atu5020 0.12 +0.7 20,158 + Atu5020 0.12 +1.5 20,166 - Atu5020 0.12 -0.5 20,186 - Atu5020 0.14 +0.2 20,262 + Atu5020 0.20 +0.6 20,262 + Atu5020 0.20 +1.0 20,290 - Atu5020 0.22 +0.0 20,312 + Atu5020 0.23 -0.4 20,344 + Atu5020 0.26 -0.6 20,344 + Atu5020 0.26 +1.3 20,344 + Atu5020 0.26 -2.1 20,344 + Atu5020 0.26 +0.3 20,352 - Atu5020 0.26 +0.1 20,352 - Atu5020 0.26 +0.7 20,352 - Atu5020 0.26 +0.8 20,403 - Atu5020 0.30 -2.9 20,428 + Atu5020 0.32 +1.1 20,429 - Atu5020 0.32 +0.8 20,440 + Atu5020 0.33 +0.6 20,440 + Atu5020 0.33 -0.4 20,440 + Atu5020 0.33 -2.1 20,440 + Atu5020 0.33 +0.4 20,477 + Atu5020 0.36 +0.8 20,485 - Atu5020 0.36 -2.9 20,485 - Atu5020 0.36 +0.2 20,499 - Atu5020 0.37 +2.3 20,523 - Atu5020 0.39 -0.0 20,538 + Atu5020 0.40 +1.2 20,546 - Atu5020 0.41 -1.7 20,546 - Atu5020 0.41 -1.0 20,637 + Atu5020 0.48 -0.6 20,637 + Atu5020 0.48 -0.6 20,637 + Atu5020 0.48 +0.3 20,652 + Atu5020 0.49 -0.3 20,660 - Atu5020 0.49 +0.9 20,675 + Atu5020 0.50 +0.1 20,683 - Atu5020 0.51 -3.6 20,683 - Atu5020 0.51 -0.6 20,694 + Atu5020 0.52 +0.5 20,714 + Atu5020 0.53 -1.8 20,722 + Atu5020 0.54 -1.3 20,722 - Atu5020 0.54 +0.6 20,724 + Atu5020 0.54 +0.0 20,811 - Atu5020 0.61 +0.1 20,823 + Atu5020 0.62 +0.0 20,831 - Atu5020 0.62 -0.6 20,832 - Atu5020 0.62 +0.3 20,863 + Atu5020 0.65 -1.0 20,883 - Atu5020 0.66 +1.3 20,889 + Atu5020 0.67 -1.8 20,895 - Atu5020 0.67 +1.6 20,941 - Atu5020 0.70 +0.2 20,969 + Atu5020 0.73 +0.4 21,064 - Atu5020 0.80 -2.4 21,171 + Atu5020 0.88 -0.9 21,173 - Atu5020 0.88 +0.4 21,193 - Atu5020 0.89 +0.6 21,230 + +0.0 21,233 - +0.6 21,250 + +0.4 21,308 + -1.1 21,313 + +0.8 21,316 - +0.1 21,316 - +0.9 21,410 + +0.6 21,418 - -0.4 21,434 - Atu5021 0.11 -0.1 21,458 - Atu5021 0.14 -0.1 21,497 + Atu5021 0.18 -0.7 21,505 - Atu5021 0.19 +0.4 21,507 + Atu5021 0.20 -1.4 21,520 - Atu5021 0.21 -1.9 21,520 - Atu5021 0.21 +0.3 21,557 - Atu5021 0.25 -0.5 21,619 + Atu5021 0.32 -1.0 21,652 + Atu5021 0.36 +1.2 21,652 + Atu5021 0.36 +0.4 21,652 + Atu5021 0.36 +0.9 21,652 + Atu5021 0.36 -1.1 21,660 - Atu5021 0.37 +0.2 21,660 - Atu5021 0.37 -1.9 21,684 - Atu5021 0.39 +1.6 21,707 + Atu5021 0.42 +0.1 21,725 - Atu5021 0.44 -2.7 21,766 - Atu5021 0.48 +0.1 21,843 - Atu5021 0.57 -0.3 21,879 - Atu5021 0.61 -1.6 22,128 - Atu5021 0.89 -0.4 22,130 - Atu5021 0.89 -0.3 22,167 + -3.7 22,252 + +0.8 22,252 + -0.1 22,260 - -1.9 22,260 - +0.1 22,260 - +0.1 22,260 - -0.3 22,275 + -0.6 22,281 + +0.4 22,299 + +0.0 22,299 + -0.1 22,321 + -2.7 22,332 + +0.3 22,332 + +1.0
Or see this region's nucleotide sequence