Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5017 and Atu5018 are separated by 34 nucleotides Atu5018 and Atu5019 are separated by 25 nucleotides Atu5019 and Atu5020 overlap by 4 nucleotides
Atu5017: Atu5017 - hypothetical protein, at 17,669 to 18,349
Atu5017
Atu5018: Atu5018 - hypothetical protein, at 18,384 to 19,208
Atu5018
Atu5019: Atu5019 - hypothetical protein, at 19,234 to 20,004
Atu5019
Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335
Atu5020
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.243 kb on + strand, within Atu5017 at 18.243 kb on + strand, within Atu5017 at 18.243 kb on + strand, within Atu5017 at 18.251 kb on - strand, within Atu5017 at 18.297 kb on - strand at 18.346 kb on - strand at 18.409 kb on + strand at 18.409 kb on - strand at 18.417 kb on - strand at 18.417 kb on - strand at 18.428 kb on + strand at 18.429 kb on - strand at 18.515 kb on - strand, within Atu5018 at 18.518 kb on - strand, within Atu5018 at 18.521 kb on + strand, within Atu5018 at 18.529 kb on - strand, within Atu5018 at 18.543 kb on + strand, within Atu5018 at 18.595 kb on + strand, within Atu5018 at 18.629 kb on - strand, within Atu5018 at 18.716 kb on + strand, within Atu5018 at 18.723 kb on + strand, within Atu5018 at 18.867 kb on + strand, within Atu5018 at 18.872 kb on + strand, within Atu5018 at 18.875 kb on - strand, within Atu5018 at 18.959 kb on + strand, within Atu5018 at 18.978 kb on - strand, within Atu5018 at 18.979 kb on - strand, within Atu5018 at 18.980 kb on + strand, within Atu5018 at 19.013 kb on + strand, within Atu5018 at 19.061 kb on - strand, within Atu5018 at 19.074 kb on + strand, within Atu5018 at 19.162 kb on + strand at 19.170 kb on - strand at 19.293 kb on - strand at 19.330 kb on - strand, within Atu5019 at 19.467 kb on + strand, within Atu5019 at 19.468 kb on + strand, within Atu5019 at 19.494 kb on + strand, within Atu5019 at 19.631 kb on - strand, within Atu5019 at 19.653 kb on - strand, within Atu5019 at 19.653 kb on - strand, within Atu5019 at 19.655 kb on + strand, within Atu5019 at 19.665 kb on + strand, within Atu5019 at 19.673 kb on - strand, within Atu5019 at 19.673 kb on - strand, within Atu5019 at 19.703 kb on + strand, within Atu5019 at 19.711 kb on - strand, within Atu5019 at 19.718 kb on - strand, within Atu5019 at 19.723 kb on + strand, within Atu5019 at 19.739 kb on - strand, within Atu5019 at 19.784 kb on - strand, within Atu5019 at 19.849 kb on - strand, within Atu5019 at 19.871 kb on + strand, within Atu5019 at 19.912 kb on - strand, within Atu5019 at 19.936 kb on - strand at 19.970 kb on + strand at 19.977 kb on + strand at 19.982 kb on + strand at 19.990 kb on - strand at 19.992 kb on + strand at 20.039 kb on + strand at 20.047 kb on - strand at 20.047 kb on - strand at 20.047 kb on - strand at 20.098 kb on + strand at 20.106 kb on - strand at 20.124 kb on + strand at 20.158 kb on + strand, within Atu5020 at 20.158 kb on + strand, within Atu5020 at 20.166 kb on - strand, within Atu5020 at 20.186 kb on - strand, within Atu5020 at 20.262 kb on + strand, within Atu5020 at 20.262 kb on + strand, within Atu5020 at 20.290 kb on - strand, within Atu5020 at 20.312 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.344 kb on + strand, within Atu5020 at 20.352 kb on - strand, within Atu5020 at 20.352 kb on - strand, within Atu5020 at 20.352 kb on - strand, within Atu5020 at 20.403 kb on - strand, within Atu5020 at 20.428 kb on + strand, within Atu5020 at 20.429 kb on - strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.440 kb on + strand, within Atu5020 at 20.477 kb on + strand, within Atu5020 at 20.485 kb on - strand, within Atu5020 at 20.485 kb on - strand, within Atu5020 at 20.499 kb on - strand, within Atu5020 at 20.523 kb on - strand, within Atu5020 at 20.538 kb on + strand, within Atu5020 at 20.546 kb on - strand, within Atu5020 at 20.546 kb on - strand, within Atu5020 at 20.637 kb on + strand, within Atu5020 at 20.637 kb on + strand, within Atu5020 at 20.637 kb on + strand, within Atu5020 at 20.652 kb on + strand, within Atu5020 at 20.660 kb on - strand, within Atu5020 at 20.675 kb on + strand, within Atu5020 at 20.683 kb on - strand, within Atu5020 at 20.683 kb on - strand, within Atu5020 at 20.694 kb on + strand, within Atu5020 at 20.714 kb on + strand, within Atu5020 at 20.722 kb on + strand, within Atu5020 at 20.722 kb on - strand, within Atu5020 at 20.724 kb on + strand, within Atu5020 at 20.811 kb on - strand, within Atu5020 at 20.823 kb on + strand, within Atu5020 at 20.831 kb on - strand, within Atu5020 at 20.832 kb on - strand, within Atu5020 at 20.863 kb on + strand, within Atu5020 at 20.883 kb on - strand, within Atu5020 at 20.889 kb on + strand, within Atu5020 at 20.895 kb on - strand, within Atu5020 at 20.941 kb on - strand, within Atu5020 at 20.969 kb on + strand, within Atu5020
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 18,243 + Atu5017 0.84 -1.0 18,243 + Atu5017 0.84 +0.6 18,243 + Atu5017 0.84 +0.2 18,251 - Atu5017 0.85 +0.4 18,297 - +0.7 18,346 - +2.1 18,409 + +0.1 18,409 - +1.1 18,417 - -0.2 18,417 - +2.0 18,428 + +0.2 18,429 - -1.4 18,515 - Atu5018 0.16 +0.5 18,518 - Atu5018 0.16 +1.4 18,521 + Atu5018 0.17 +1.7 18,529 - Atu5018 0.18 -0.8 18,543 + Atu5018 0.19 +0.5 18,595 + Atu5018 0.26 +0.0 18,629 - Atu5018 0.30 -1.8 18,716 + Atu5018 0.40 -0.6 18,723 + Atu5018 0.41 +0.3 18,867 + Atu5018 0.59 -0.3 18,872 + Atu5018 0.59 -2.6 18,875 - Atu5018 0.60 +1.0 18,959 + Atu5018 0.70 -0.4 18,978 - Atu5018 0.72 +1.4 18,979 - Atu5018 0.72 -0.6 18,980 + Atu5018 0.72 +0.2 19,013 + Atu5018 0.76 -1.8 19,061 - Atu5018 0.82 +0.6 19,074 + Atu5018 0.84 -1.9 19,162 + -1.3 19,170 - -2.1 19,293 - +0.2 19,330 - Atu5019 0.12 +0.2 19,467 + Atu5019 0.30 +1.6 19,468 + Atu5019 0.30 +1.4 19,494 + Atu5019 0.34 -2.4 19,631 - Atu5019 0.51 +0.1 19,653 - Atu5019 0.54 +2.7 19,653 - Atu5019 0.54 -0.8 19,655 + Atu5019 0.55 -3.7 19,665 + Atu5019 0.56 +0.0 19,673 - Atu5019 0.57 +1.3 19,673 - Atu5019 0.57 +2.7 19,703 + Atu5019 0.61 +0.6 19,711 - Atu5019 0.62 -1.0 19,718 - Atu5019 0.63 -0.4 19,723 + Atu5019 0.63 -2.1 19,739 - Atu5019 0.65 -1.4 19,784 - Atu5019 0.71 +0.4 19,849 - Atu5019 0.80 -2.4 19,871 + Atu5019 0.83 -1.8 19,912 - Atu5019 0.88 +1.0 19,936 - +0.9 19,970 + +0.8 19,977 + -2.3 19,982 + +0.0 19,990 - -0.2 19,992 + +0.6 20,039 + -0.1 20,047 - +1.6 20,047 - -1.9 20,047 - -0.9 20,098 + +1.0 20,106 - +0.9 20,124 + +2.0 20,158 + Atu5020 0.12 +0.7 20,158 + Atu5020 0.12 +1.5 20,166 - Atu5020 0.12 -0.5 20,186 - Atu5020 0.14 +0.2 20,262 + Atu5020 0.20 +0.6 20,262 + Atu5020 0.20 +1.0 20,290 - Atu5020 0.22 +0.0 20,312 + Atu5020 0.23 -0.4 20,344 + Atu5020 0.26 -0.6 20,344 + Atu5020 0.26 +1.3 20,344 + Atu5020 0.26 -2.1 20,344 + Atu5020 0.26 +0.3 20,352 - Atu5020 0.26 +0.1 20,352 - Atu5020 0.26 +0.7 20,352 - Atu5020 0.26 +0.8 20,403 - Atu5020 0.30 -2.9 20,428 + Atu5020 0.32 +1.1 20,429 - Atu5020 0.32 +0.8 20,440 + Atu5020 0.33 +0.6 20,440 + Atu5020 0.33 -0.4 20,440 + Atu5020 0.33 -2.1 20,440 + Atu5020 0.33 +0.4 20,477 + Atu5020 0.36 +0.8 20,485 - Atu5020 0.36 -2.9 20,485 - Atu5020 0.36 +0.2 20,499 - Atu5020 0.37 +2.3 20,523 - Atu5020 0.39 -0.0 20,538 + Atu5020 0.40 +1.2 20,546 - Atu5020 0.41 -1.7 20,546 - Atu5020 0.41 -1.0 20,637 + Atu5020 0.48 -0.6 20,637 + Atu5020 0.48 -0.6 20,637 + Atu5020 0.48 +0.3 20,652 + Atu5020 0.49 -0.3 20,660 - Atu5020 0.49 +0.9 20,675 + Atu5020 0.50 +0.1 20,683 - Atu5020 0.51 -3.6 20,683 - Atu5020 0.51 -0.6 20,694 + Atu5020 0.52 +0.5 20,714 + Atu5020 0.53 -1.8 20,722 + Atu5020 0.54 -1.3 20,722 - Atu5020 0.54 +0.6 20,724 + Atu5020 0.54 +0.0 20,811 - Atu5020 0.61 +0.1 20,823 + Atu5020 0.62 +0.0 20,831 - Atu5020 0.62 -0.6 20,832 - Atu5020 0.62 +0.3 20,863 + Atu5020 0.65 -1.0 20,883 - Atu5020 0.66 +1.3 20,889 + Atu5020 0.67 -1.8 20,895 - Atu5020 0.67 +1.6 20,941 - Atu5020 0.70 +0.2 20,969 + Atu5020 0.73 +0.4
Or see this region's nucleotide sequence