Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3486 and Atu3487 are separated by 47 nucleotides Atu3487 and Atu3488 are separated by 226 nucleotides
Atu3486: Atu3486 - DeoR family transcriptional regulator, at 536,529 to 537,359
Atu3486
Atu3487: Atu3487 - sugar ABC transporter substrate-binding protein, at 537,407 to 538,417
Atu3487
Atu3488: Atu3488 - ABC transporter permease, at 538,644 to 540,176
Atu3488
Position (kb) 537
538
539 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 536.538 kb on + strand at 536.573 kb on + strand at 536.592 kb on + strand at 536.597 kb on + strand at 536.605 kb on - strand at 536.872 kb on - strand, within Atu3486 at 536.924 kb on - strand, within Atu3486 at 537.003 kb on + strand, within Atu3486 at 537.423 kb on + strand at 537.450 kb on + strand at 537.504 kb on + strand at 537.553 kb on + strand, within Atu3487 at 537.583 kb on - strand, within Atu3487 at 537.601 kb on + strand, within Atu3487 at 537.606 kb on + strand, within Atu3487 at 537.609 kb on - strand, within Atu3487 at 537.616 kb on + strand, within Atu3487 at 537.616 kb on + strand, within Atu3487 at 537.616 kb on + strand, within Atu3487 at 537.801 kb on + strand, within Atu3487 at 537.809 kb on - strand, within Atu3487 at 537.976 kb on - strand, within Atu3487 at 537.977 kb on - strand, within Atu3487 at 538.086 kb on - strand, within Atu3487 at 538.141 kb on - strand, within Atu3487 at 538.152 kb on + strand, within Atu3487 at 538.157 kb on + strand, within Atu3487 at 538.160 kb on - strand, within Atu3487 at 538.273 kb on + strand, within Atu3487 at 538.451 kb on - strand at 538.460 kb on - strand at 538.587 kb on + strand at 538.592 kb on + strand at 538.595 kb on - strand at 538.911 kb on - strand, within Atu3488 at 538.911 kb on - strand, within Atu3488 at 538.941 kb on + strand, within Atu3488 at 539.258 kb on + strand, within Atu3488 at 539.298 kb on - strand, within Atu3488
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 536,538 + -0.7 536,573 + +0.5 536,592 + +1.6 536,597 + -0.1 536,605 - +1.3 536,872 - Atu3486 0.41 -3.0 536,924 - Atu3486 0.48 -2.1 537,003 + Atu3486 0.57 -3.1 537,423 + +0.6 537,450 + +0.3 537,504 + -0.2 537,553 + Atu3487 0.14 +0.8 537,583 - Atu3487 0.17 -0.5 537,601 + Atu3487 0.19 -3.1 537,606 + Atu3487 0.20 +1.4 537,609 - Atu3487 0.20 +0.3 537,616 + Atu3487 0.21 -0.8 537,616 + Atu3487 0.21 -0.8 537,616 + Atu3487 0.21 +0.2 537,801 + Atu3487 0.39 +0.4 537,809 - Atu3487 0.40 -0.6 537,976 - Atu3487 0.56 +0.8 537,977 - Atu3487 0.56 +0.3 538,086 - Atu3487 0.67 +1.7 538,141 - Atu3487 0.73 -0.1 538,152 + Atu3487 0.74 +0.9 538,157 + Atu3487 0.74 +1.0 538,160 - Atu3487 0.74 +0.0 538,273 + Atu3487 0.86 -0.5 538,451 - +0.4 538,460 - +0.8 538,587 + -0.9 538,592 + +0.9 538,595 - -1.8 538,911 - Atu3488 0.17 +2.2 538,911 - Atu3488 0.17 +3.6 538,941 + Atu3488 0.19 -2.1 539,258 + Atu3488 0.40 -0.6 539,298 - Atu3488 0.43 -4.0
Or see this region's nucleotide sequence