Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3484 and Atu3485 are separated by 50 nucleotides Atu3485 and Atu3486 are separated by 200 nucleotides
Atu3484: Atu3484 - hypothetical protein, at 532,889 to 534,181
Atu3484
Atu3485: Atu3485 - short chain dehydrogenase, at 534,232 to 536,328
Atu3485
Atu3486: Atu3486 - DeoR family transcriptional regulator, at 536,529 to 537,359
Atu3486
Position (kb) 534
535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.474 kb on + strand, within Atu3484 at 533.480 kb on + strand, within Atu3484 at 533.483 kb on - strand, within Atu3484 at 533.556 kb on + strand, within Atu3484 at 533.558 kb on + strand, within Atu3484 at 533.940 kb on - strand, within Atu3484 at 533.959 kb on + strand, within Atu3484 at 533.972 kb on - strand, within Atu3484 at 533.995 kb on + strand, within Atu3484 at 534.017 kb on + strand, within Atu3484 at 534.017 kb on - strand, within Atu3484 at 534.492 kb on + strand, within Atu3485 at 534.551 kb on + strand, within Atu3485 at 534.675 kb on + strand, within Atu3485 at 534.684 kb on - strand, within Atu3485 at 534.847 kb on - strand, within Atu3485 at 534.907 kb on + strand, within Atu3485 at 534.958 kb on + strand, within Atu3485 at 535.193 kb on + strand, within Atu3485 at 535.201 kb on - strand, within Atu3485 at 535.201 kb on - strand, within Atu3485 at 535.201 kb on - strand, within Atu3485 at 535.322 kb on + strand, within Atu3485 at 535.436 kb on + strand, within Atu3485 at 535.616 kb on - strand, within Atu3485 at 535.624 kb on + strand, within Atu3485 at 535.648 kb on + strand, within Atu3485 at 535.666 kb on + strand, within Atu3485 at 535.694 kb on - strand, within Atu3485 at 535.725 kb on + strand, within Atu3485 at 535.822 kb on - strand, within Atu3485 at 535.904 kb on + strand, within Atu3485 at 535.945 kb on + strand, within Atu3485 at 535.974 kb on + strand, within Atu3485 at 535.980 kb on + strand, within Atu3485 at 536.041 kb on - strand, within Atu3485 at 536.538 kb on + strand at 536.573 kb on + strand at 536.592 kb on + strand at 536.597 kb on + strand at 536.605 kb on - strand at 536.872 kb on - strand, within Atu3486 at 536.924 kb on - strand, within Atu3486 at 537.003 kb on + strand, within Atu3486
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 533,474 + Atu3484 0.45 +0.5 533,480 + Atu3484 0.46 +0.2 533,483 - Atu3484 0.46 -0.4 533,556 + Atu3484 0.52 +0.0 533,558 + Atu3484 0.52 -3.0 533,940 - Atu3484 0.81 -1.9 533,959 + Atu3484 0.83 +1.4 533,972 - Atu3484 0.84 +0.2 533,995 + Atu3484 0.86 +0.3 534,017 + Atu3484 0.87 +0.2 534,017 - Atu3484 0.87 +0.2 534,492 + Atu3485 0.12 +0.0 534,551 + Atu3485 0.15 -1.7 534,675 + Atu3485 0.21 -1.5 534,684 - Atu3485 0.22 +0.2 534,847 - Atu3485 0.29 -0.5 534,907 + Atu3485 0.32 +1.3 534,958 + Atu3485 0.35 -2.3 535,193 + Atu3485 0.46 -2.0 535,201 - Atu3485 0.46 +0.7 535,201 - Atu3485 0.46 -0.8 535,201 - Atu3485 0.46 -2.9 535,322 + Atu3485 0.52 -0.8 535,436 + Atu3485 0.57 -2.7 535,616 - Atu3485 0.66 +0.6 535,624 + Atu3485 0.66 +1.9 535,648 + Atu3485 0.68 -3.1 535,666 + Atu3485 0.68 +0.7 535,694 - Atu3485 0.70 +0.0 535,725 + Atu3485 0.71 -0.4 535,822 - Atu3485 0.76 -1.0 535,904 + Atu3485 0.80 +0.8 535,945 + Atu3485 0.82 -1.4 535,974 + Atu3485 0.83 +0.7 535,980 + Atu3485 0.83 -1.8 536,041 - Atu3485 0.86 +0.1 536,538 + -0.7 536,573 + +0.5 536,592 + +1.6 536,597 + -0.1 536,605 - +1.3 536,872 - Atu3486 0.41 -3.0 536,924 - Atu3486 0.48 -2.1 537,003 + Atu3486 0.57 -3.1
Or see this region's nucleotide sequence