Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3219 and Atu3221 are separated by 243 nucleotides Atu3221 and Atu3222 are separated by 92 nucleotides Atu3222 and Atu3223 are separated by 69 nucleotides
Atu3219: Atu3219 - dihydroxy-acid dehydratase, at 233,509 to 235,320
Atu3219
Atu3221: Atu3221 - hypothetical protein, at 235,564 to 235,752
Atu3221
Atu3222: Atu3222 - ribose ABC transporter substrate-binding protein, at 235,845 to 236,804
Atu3222
Atu3223: Atu3223 - ribose ABC transporter ATPase, at 236,874 to 238,397
Atu3223
Position (kb) 235
236
237 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 234.846 kb on - strand, within Atu3219 at 234.851 kb on - strand, within Atu3219 at 234.851 kb on - strand, within Atu3219 at 234.916 kb on - strand, within Atu3219 at 234.944 kb on - strand, within Atu3219 at 234.967 kb on - strand, within Atu3219 at 234.977 kb on - strand, within Atu3219 at 234.987 kb on + strand, within Atu3219 at 234.991 kb on - strand, within Atu3219 at 235.093 kb on - strand, within Atu3219 at 235.124 kb on - strand, within Atu3219 at 235.145 kb on - strand at 235.150 kb on - strand at 235.160 kb on - strand at 235.344 kb on + strand at 235.462 kb on - strand at 235.823 kb on + strand at 235.829 kb on - strand at 235.889 kb on - strand at 235.960 kb on + strand, within Atu3222 at 235.965 kb on + strand, within Atu3222 at 236.013 kb on - strand, within Atu3222 at 236.068 kb on + strand, within Atu3222 at 236.097 kb on - strand, within Atu3222 at 236.102 kb on - strand, within Atu3222 at 236.267 kb on + strand, within Atu3222 at 236.371 kb on - strand, within Atu3222 at 236.399 kb on + strand, within Atu3222 at 236.575 kb on - strand, within Atu3222 at 236.603 kb on + strand, within Atu3222 at 236.611 kb on - strand, within Atu3222 at 236.682 kb on + strand, within Atu3222 at 236.682 kb on + strand, within Atu3222 at 236.734 kb on + strand at 236.795 kb on + strand at 236.832 kb on - strand at 236.832 kb on - strand at 236.876 kb on + strand at 236.937 kb on + strand at 236.945 kb on - strand at 237.037 kb on + strand, within Atu3223 at 237.045 kb on - strand, within Atu3223 at 237.065 kb on - strand, within Atu3223 at 237.149 kb on - strand, within Atu3223 at 237.242 kb on + strand, within Atu3223 at 237.419 kb on + strand, within Atu3223 at 237.488 kb on + strand, within Atu3223 at 237.496 kb on - strand, within Atu3223 at 237.509 kb on + strand, within Atu3223 at 237.521 kb on + strand, within Atu3223 at 237.563 kb on + strand, within Atu3223 at 237.568 kb on + strand, within Atu3223 at 237.570 kb on + strand, within Atu3223 at 237.571 kb on - strand, within Atu3223 at 237.578 kb on - strand, within Atu3223 at 237.603 kb on + strand, within Atu3223 at 237.686 kb on - strand, within Atu3223 at 237.692 kb on + strand, within Atu3223 at 237.714 kb on - strand, within Atu3223 at 237.799 kb on - strand, within Atu3223
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 234,846 - Atu3219 0.74 -0.6 234,851 - Atu3219 0.74 -0.9 234,851 - Atu3219 0.74 +0.9 234,916 - Atu3219 0.78 +0.5 234,944 - Atu3219 0.79 -0.2 234,967 - Atu3219 0.80 -1.4 234,977 - Atu3219 0.81 -0.3 234,987 + Atu3219 0.82 -3.0 234,991 - Atu3219 0.82 -0.9 235,093 - Atu3219 0.87 -0.8 235,124 - Atu3219 0.89 -0.9 235,145 - +2.0 235,150 - -3.8 235,160 - +0.7 235,344 + -3.5 235,462 - +3.9 235,823 + +0.5 235,829 - +0.0 235,889 - -0.4 235,960 + Atu3222 0.12 -1.3 235,965 + Atu3222 0.12 +1.7 236,013 - Atu3222 0.17 -0.0 236,068 + Atu3222 0.23 +0.6 236,097 - Atu3222 0.26 +1.2 236,102 - Atu3222 0.27 +0.4 236,267 + Atu3222 0.44 +0.3 236,371 - Atu3222 0.55 -2.3 236,399 + Atu3222 0.58 +1.4 236,575 - Atu3222 0.76 -1.5 236,603 + Atu3222 0.79 +1.7 236,611 - Atu3222 0.80 +1.2 236,682 + Atu3222 0.87 +1.5 236,682 + Atu3222 0.87 -0.3 236,734 + -2.7 236,795 + -1.4 236,832 - +1.0 236,832 - +1.4 236,876 + +0.3 236,937 + +1.7 236,945 - -0.4 237,037 + Atu3223 0.11 +0.7 237,045 - Atu3223 0.11 +0.1 237,065 - Atu3223 0.13 +0.2 237,149 - Atu3223 0.18 -0.5 237,242 + Atu3223 0.24 +1.8 237,419 + Atu3223 0.36 -1.1 237,488 + Atu3223 0.40 +0.2 237,496 - Atu3223 0.41 +0.0 237,509 + Atu3223 0.42 -0.8 237,521 + Atu3223 0.42 +1.4 237,563 + Atu3223 0.45 -0.9 237,568 + Atu3223 0.46 +0.0 237,570 + Atu3223 0.46 +0.6 237,571 - Atu3223 0.46 -1.5 237,578 - Atu3223 0.46 -1.6 237,603 + Atu3223 0.48 +1.6 237,686 - Atu3223 0.53 +0.5 237,692 + Atu3223 0.54 -1.7 237,714 - Atu3223 0.55 +1.8 237,799 - Atu3223 0.61 -1.1
Or see this region's nucleotide sequence