Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0931 and Atu0932 are separated by 178 nucleotides Atu0932 and Atu0933 are separated by 111 nucleotides Atu0933 and Atu0934 are separated by 27 nucleotides
Atu0931: Atu0931 - penicillin binding protein, at 920,246 to 922,519
Atu0931
Atu0932: Atu0932 - hypothetical protein, at 922,698 to 923,177
Atu0932
Atu0933: Atu0933 - beta-lactamase class D, at 923,289 to 924,113
Atu0933
Atu0934: Atu0934 - hypothetical protein, at 924,141 to 924,476
Atu0934
Position (kb) 922
923
924 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 922.012 kb on + strand, within Atu0931 at 922.042 kb on + strand, within Atu0931 at 922.045 kb on - strand, within Atu0931 at 922.113 kb on + strand, within Atu0931 at 922.167 kb on + strand, within Atu0931 at 922.209 kb on + strand, within Atu0931 at 922.241 kb on + strand, within Atu0931 at 922.313 kb on + strand at 922.360 kb on + strand at 922.450 kb on + strand at 922.645 kb on - strand at 922.646 kb on - strand at 922.658 kb on - strand at 922.832 kb on - strand, within Atu0932 at 922.832 kb on - strand, within Atu0932 at 922.842 kb on - strand, within Atu0932 at 922.915 kb on + strand, within Atu0932 at 922.931 kb on + strand, within Atu0932 at 922.998 kb on + strand, within Atu0932 at 923.011 kb on + strand, within Atu0932 at 923.043 kb on + strand, within Atu0932 at 923.043 kb on + strand, within Atu0932 at 923.096 kb on - strand, within Atu0932 at 923.146 kb on + strand at 923.396 kb on + strand, within Atu0933 at 923.440 kb on + strand, within Atu0933 at 923.843 kb on + strand, within Atu0933 at 923.994 kb on + strand, within Atu0933 at 923.994 kb on + strand, within Atu0933 at 924.036 kb on + strand at 924.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 922,012 + Atu0931 0.78 +0.3 922,042 + Atu0931 0.79 -2.6 922,045 - Atu0931 0.79 -2.1 922,113 + Atu0931 0.82 -3.5 922,167 + Atu0931 0.84 -1.1 922,209 + Atu0931 0.86 -3.5 922,241 + Atu0931 0.88 -1.7 922,313 + -0.6 922,360 + +1.4 922,450 + +0.5 922,645 - +0.0 922,646 - -0.0 922,658 - -0.1 922,832 - Atu0932 0.28 -0.6 922,832 - Atu0932 0.28 -1.0 922,842 - Atu0932 0.30 -0.5 922,915 + Atu0932 0.45 -2.3 922,931 + Atu0932 0.49 -0.6 922,998 + Atu0932 0.62 -0.3 923,011 + Atu0932 0.65 -0.3 923,043 + Atu0932 0.72 +3.1 923,043 + Atu0932 0.72 -1.7 923,096 - Atu0932 0.83 -0.4 923,146 + -3.9 923,396 + Atu0933 0.13 -2.5 923,440 + Atu0933 0.18 +0.2 923,843 + Atu0933 0.67 +1.7 923,994 + Atu0933 0.85 -0.8 923,994 + Atu0933 0.85 +0.4 924,036 + +0.4 924,058 - -0.5
Or see this region's nucleotide sequence