Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6041 and Atu6042 overlap by 4 nucleotides Atu6042 and Atu6043 are separated by 363 nucleotides Atu6043 and Atu6044 are separated by 127 nucleotides
Atu6041: Atu6041 - conjugal transfer protein, at 50,266 to 51,237
Atu6041
Atu6042: Atu6042 - autoinducer synthesis protein, at 51,234 to 51,869
Atu6042
Atu6043: Atu6043 - replication protein A, at 52,233 to 53,450
Atu6043
Atu6044: Atu6044 - replication protein, at 53,578 to 54,690
Atu6044
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1 at 51.252 kb on - strand at 51.252 kb on - strand at 51.254 kb on + strand at 51.275 kb on + strand at 51.280 kb on - strand at 51.285 kb on - strand at 51.300 kb on - strand, within Atu6042 at 51.366 kb on + strand, within Atu6042 at 51.371 kb on + strand, within Atu6042 at 51.491 kb on + strand, within Atu6042 at 51.491 kb on + strand, within Atu6042 at 51.492 kb on + strand, within Atu6042 at 51.542 kb on - strand, within Atu6042 at 51.551 kb on - strand, within Atu6042 at 51.557 kb on + strand, within Atu6042 at 51.564 kb on + strand, within Atu6042 at 51.564 kb on + strand, within Atu6042 at 51.567 kb on + strand, within Atu6042 at 51.567 kb on + strand, within Atu6042 at 51.572 kb on - strand, within Atu6042 at 51.599 kb on - strand, within Atu6042 at 51.711 kb on - strand, within Atu6042 at 51.738 kb on + strand, within Atu6042 at 51.746 kb on - strand, within Atu6042 at 51.752 kb on + strand, within Atu6042 at 51.778 kb on + strand, within Atu6042 at 51.820 kb on - strand at 51.918 kb on + strand at 51.918 kb on + strand at 51.926 kb on - strand at 51.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 51,252 - +0.7 51,252 - -1.1 51,254 + +0.8 51,275 + -0.6 51,280 - -0.6 51,285 - -1.9 51,300 - Atu6042 0.10 +0.7 51,366 + Atu6042 0.21 +0.1 51,371 + Atu6042 0.22 +0.8 51,491 + Atu6042 0.40 +0.5 51,491 + Atu6042 0.40 +0.4 51,492 + Atu6042 0.41 +0.8 51,542 - Atu6042 0.48 +1.1 51,551 - Atu6042 0.50 +0.3 51,557 + Atu6042 0.51 +1.5 51,564 + Atu6042 0.52 -1.3 51,564 + Atu6042 0.52 -0.4 51,567 + Atu6042 0.52 +1.2 51,567 + Atu6042 0.52 -0.6 51,572 - Atu6042 0.53 -0.4 51,599 - Atu6042 0.57 -2.4 51,711 - Atu6042 0.75 -0.4 51,738 + Atu6042 0.79 -0.0 51,746 - Atu6042 0.81 -0.8 51,752 + Atu6042 0.81 +1.4 51,778 + Atu6042 0.86 +0.5 51,820 - -0.4 51,918 + +0.6 51,918 + -1.0 51,926 - +0.6 51,926 - +0.2
Or see this region's nucleotide sequence