Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3495 and Atu3496 are separated by 9 nucleotides Atu3496 and Atu3497 are separated by 180 nucleotides Atu3497 and Atu3498 are separated by 69 nucleotides
Atu3495: Atu3495 - diguanylate cyclase, at 545,969 to 547,903
Atu3495
Atu3496: Atu3496 - hypothetical protein, at 547,913 to 548,419
Atu3496
Atu3497: Atu3497 - hypothetical protein, at 548,600 to 548,947
Atu3497
Atu3498: Atu3498 - aldehyde dehydrogenase, at 549,017 to 550,453
Atu3498
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 547.069 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.327 kb on - strand, within Atu3495 at 547.409 kb on - strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.544 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.558 kb on + strand, within Atu3495 at 547.635 kb on + strand, within Atu3495 at 547.826 kb on - strand at 547.877 kb on - strand at 547.883 kb on - strand at 548.113 kb on - strand, within Atu3496 at 548.232 kb on - strand, within Atu3496 at 548.404 kb on - strand at 548.624 kb on - strand at 548.827 kb on - strand, within Atu3497 at 548.907 kb on - strand, within Atu3497 at 548.988 kb on + strand at 548.988 kb on + strand at 548.988 kb on + strand at 548.998 kb on + strand at 549.009 kb on - strand at 549.025 kb on - strand at 549.030 kb on - strand at 549.061 kb on + strand at 549.183 kb on + strand, within Atu3498 at 549.243 kb on + strand, within Atu3498 at 549.251 kb on - strand, within Atu3498 at 549.273 kb on - strand, within Atu3498 at 549.298 kb on + strand, within Atu3498 at 549.381 kb on + strand, within Atu3498 at 549.389 kb on - strand, within Atu3498 at 549.389 kb on - strand, within Atu3498 at 549.391 kb on + strand, within Atu3498
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 547,069 + Atu3495 0.57 -2.3 547,319 + Atu3495 0.70 +0.5 547,319 + Atu3495 0.70 +0.3 547,319 + Atu3495 0.70 +1.5 547,319 + Atu3495 0.70 +0.7 547,327 - Atu3495 0.70 +3.1 547,409 - Atu3495 0.74 -1.9 547,537 + Atu3495 0.81 +1.1 547,537 + Atu3495 0.81 +0.3 547,544 - Atu3495 0.81 +1.0 547,545 - Atu3495 0.81 +1.2 547,545 - Atu3495 0.81 -0.7 547,553 - Atu3495 0.82 +1.6 547,553 - Atu3495 0.82 -0.5 547,558 + Atu3495 0.82 -1.5 547,635 + Atu3495 0.86 -1.5 547,826 - +2.3 547,877 - +0.6 547,883 - -1.5 548,113 - Atu3496 0.39 +0.4 548,232 - Atu3496 0.63 +3.8 548,404 - +1.0 548,624 - +0.5 548,827 - Atu3497 0.65 +0.8 548,907 - Atu3497 0.88 -0.2 548,988 + +0.7 548,988 + -0.7 548,988 + +0.4 548,998 + +0.5 549,009 - -0.2 549,025 - +1.7 549,030 - -0.6 549,061 + -0.2 549,183 + Atu3498 0.12 -0.4 549,243 + Atu3498 0.16 -0.7 549,251 - Atu3498 0.16 -0.2 549,273 - Atu3498 0.18 -0.3 549,298 + Atu3498 0.20 +0.2 549,381 + Atu3498 0.25 +1.9 549,389 - Atu3498 0.26 -3.0 549,389 - Atu3498 0.26 -0.5 549,391 + Atu3498 0.26 +0.1
Or see this region's nucleotide sequence