Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3300 and Atu3301 are separated by 37 nucleotides Atu3301 and Atu3302 are separated by 249 nucleotides
Atu3300: Atu3300 - aminotransferase, at 327,135 to 328,487
Atu3300
Atu3301: Atu3301 - short-chain alcohol dehydrogenase, at 328,525 to 329,244
Atu3301
Atu3302: Atu3302 - cellulose biosynthesis protein, at 329,494 to 331,140
Atu3302
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 327.535 kb on - strand, within Atu3300 at 327.713 kb on - strand, within Atu3300 at 327.802 kb on + strand, within Atu3300 at 327.819 kb on + strand, within Atu3300 at 327.825 kb on - strand, within Atu3300 at 327.854 kb on + strand, within Atu3300 at 327.934 kb on - strand, within Atu3300 at 327.934 kb on - strand, within Atu3300 at 327.946 kb on - strand, within Atu3300 at 327.968 kb on - strand, within Atu3300 at 327.968 kb on - strand, within Atu3300 at 328.039 kb on + strand, within Atu3300 at 328.154 kb on + strand, within Atu3300 at 328.154 kb on + strand, within Atu3300 at 328.154 kb on - strand, within Atu3300 at 328.219 kb on - strand, within Atu3300 at 328.219 kb on - strand, within Atu3300 at 328.336 kb on + strand, within Atu3300 at 328.344 kb on - strand, within Atu3300 at 328.366 kb on - strand at 328.394 kb on + strand at 328.476 kb on - strand at 328.486 kb on - strand at 328.581 kb on + strand at 328.601 kb on - strand, within Atu3301 at 328.691 kb on - strand, within Atu3301 at 328.727 kb on + strand, within Atu3301 at 328.814 kb on + strand, within Atu3301 at 328.869 kb on - strand, within Atu3301 at 328.983 kb on - strand, within Atu3301 at 329.030 kb on - strand, within Atu3301 at 329.033 kb on + strand, within Atu3301 at 329.051 kb on - strand, within Atu3301 at 329.086 kb on + strand, within Atu3301 at 329.094 kb on - strand, within Atu3301 at 329.211 kb on + strand at 329.224 kb on - strand at 329.315 kb on + strand at 329.383 kb on + strand at 329.444 kb on - strand at 329.484 kb on - strand at 329.526 kb on - strand at 329.567 kb on - strand at 329.567 kb on - strand at 329.567 kb on - strand at 329.842 kb on - strand, within Atu3302 at 329.850 kb on + strand, within Atu3302 at 329.850 kb on + strand, within Atu3302 at 329.861 kb on + strand, within Atu3302 at 329.935 kb on + strand, within Atu3302 at 329.938 kb on - strand, within Atu3302 at 330.023 kb on - strand, within Atu3302 at 330.091 kb on - strand, within Atu3302 at 330.092 kb on - strand, within Atu3302 at 330.092 kb on - strand, within Atu3302 at 330.105 kb on + strand, within Atu3302 at 330.193 kb on + strand, within Atu3302
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 327,535 - Atu3300 0.30 -2.1 327,713 - Atu3300 0.43 -0.0 327,802 + Atu3300 0.49 -1.3 327,819 + Atu3300 0.51 -1.2 327,825 - Atu3300 0.51 -1.6 327,854 + Atu3300 0.53 +0.4 327,934 - Atu3300 0.59 +1.9 327,934 - Atu3300 0.59 -1.3 327,946 - Atu3300 0.60 +0.6 327,968 - Atu3300 0.62 +1.5 327,968 - Atu3300 0.62 -1.3 328,039 + Atu3300 0.67 -1.9 328,154 + Atu3300 0.75 +0.4 328,154 + Atu3300 0.75 +0.2 328,154 - Atu3300 0.75 +1.4 328,219 - Atu3300 0.80 -0.8 328,219 - Atu3300 0.80 -0.2 328,336 + Atu3300 0.89 +0.5 328,344 - Atu3300 0.89 +0.5 328,366 - +2.8 328,394 + +0.4 328,476 - -0.9 328,486 - -1.2 328,581 + +0.5 328,601 - Atu3301 0.11 -1.5 328,691 - Atu3301 0.23 -0.7 328,727 + Atu3301 0.28 -2.3 328,814 + Atu3301 0.40 -2.6 328,869 - Atu3301 0.48 +2.3 328,983 - Atu3301 0.64 -0.1 329,030 - Atu3301 0.70 +1.6 329,033 + Atu3301 0.71 +2.2 329,051 - Atu3301 0.73 +0.6 329,086 + Atu3301 0.78 -2.1 329,094 - Atu3301 0.79 +0.1 329,211 + +0.7 329,224 - -0.7 329,315 + -0.5 329,383 + -1.8 329,444 - +0.6 329,484 - -0.8 329,526 - +1.1 329,567 - -0.1 329,567 - -1.1 329,567 - -0.1 329,842 - Atu3302 0.21 +1.0 329,850 + Atu3302 0.22 -0.3 329,850 + Atu3302 0.22 +1.4 329,861 + Atu3302 0.22 +1.6 329,935 + Atu3302 0.27 +4.4 329,938 - Atu3302 0.27 +0.1 330,023 - Atu3302 0.32 +0.2 330,091 - Atu3302 0.36 -0.6 330,092 - Atu3302 0.36 +0.4 330,092 - Atu3302 0.36 -0.2 330,105 + Atu3302 0.37 +1.0 330,193 + Atu3302 0.42 -0.5
Or see this region's nucleotide sequence