Strain Fitness in Agrobacterium fabrum C58 around Atu3261

Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3260 and Atu3261 are separated by 16 nucleotidesAtu3261 and Atu3262 are separated by 100 nucleotides Atu3260: Atu3260 - ABC transporter substrate binding protein, at 277,383 to 278,381 Atu3260 Atu3261: Atu3261 - ABC transporter permease, at 278,398 to 280,218 Atu3261 Atu3262: Atu3262 - ABC transporter permease, at 280,319 to 282,154 Atu3262 Position (kb) 278 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 277.407 kb on - strandat 277.459 kb on + strandat 277.467 kb on - strandat 277.467 kb on - strandat 277.467 kb on - strandat 277.504 kb on + strand, within Atu3260at 277.504 kb on + strand, within Atu3260at 277.504 kb on + strand, within Atu3260at 277.612 kb on + strand, within Atu3260at 277.744 kb on + strand, within Atu3260at 277.783 kb on - strand, within Atu3260at 277.805 kb on - strand, within Atu3260at 277.810 kb on - strand, within Atu3260at 277.842 kb on + strand, within Atu3260at 277.877 kb on + strand, within Atu3260at 278.012 kb on + strand, within Atu3260at 278.078 kb on - strand, within Atu3260at 278.097 kb on - strand, within Atu3260at 278.108 kb on - strand, within Atu3260at 278.108 kb on - strand, within Atu3260at 278.108 kb on - strand, within Atu3260at 278.108 kb on - strand, within Atu3260at 278.118 kb on - strand, within Atu3260at 278.138 kb on + strand, within Atu3260at 278.163 kb on - strand, within Atu3260at 278.284 kb on + strandat 278.292 kb on - strandat 278.309 kb on + strandat 278.458 kb on + strandat 278.535 kb on + strandat 278.538 kb on + strandat 278.646 kb on - strand, within Atu3261at 278.698 kb on - strand, within Atu3261at 278.874 kb on - strand, within Atu3261at 278.891 kb on + strand, within Atu3261at 278.910 kb on - strand, within Atu3261at 278.936 kb on + strand, within Atu3261at 279.016 kb on + strand, within Atu3261at 279.176 kb on + strand, within Atu3261at 279.376 kb on - strand, within Atu3261at 279.384 kb on - strand, within Atu3261at 279.438 kb on + strand, within Atu3261at 279.453 kb on + strand, within Atu3261at 279.590 kb on + strand, within Atu3261at 279.598 kb on - strand, within Atu3261at 279.679 kb on + strand, within Atu3261at 279.695 kb on + strand, within Atu3261at 279.833 kb on + strand, within Atu3261at 279.854 kb on + strand, within Atu3261at 279.857 kb on - strand, within Atu3261at 279.866 kb on + strand, within Atu3261at 280.030 kb on + strand, within Atu3261at 280.038 kb on - strandat 280.058 kb on + strandat 280.082 kb on + strandat 280.090 kb on - strandat 280.100 kb on - strandat 280.117 kb on + strandat 280.222 kb on - strandat 280.282 kb on + strandat 280.334 kb on - strandat 280.340 kb on + strandat 280.374 kb on + strandat 280.382 kb on - strandat 280.510 kb on - strand, within Atu3262at 280.585 kb on + strand, within Atu3262at 280.618 kb on + strand, within Atu3262at 280.618 kb on + strand, within Atu3262at 280.743 kb on + strand, within Atu3262at 280.803 kb on - strand, within Atu3262at 280.820 kb on - strand, within Atu3262at 280.954 kb on - strand, within Atu3262at 280.956 kb on + strand, within Atu3262at 281.015 kb on - strand, within Atu3262at 281.017 kb on + strand, within Atu3262at 281.017 kb on + strand, within Atu3262at 281.017 kb on + strand, within Atu3262at 281.064 kb on + strand, within Atu3262at 281.153 kb on - strand, within Atu3262at 281.168 kb on + strand, within Atu3262

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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277,407 - +0.4
277,459 + -1.4
277,467 - +0.7
277,467 - +1.4
277,467 - +0.2
277,504 + Atu3260 0.12 +4.2
277,504 + Atu3260 0.12 -2.3
277,504 + Atu3260 0.12 -0.2
277,612 + Atu3260 0.23 +1.8
277,744 + Atu3260 0.36 -0.6
277,783 - Atu3260 0.40 +1.3
277,805 - Atu3260 0.42 -1.0
277,810 - Atu3260 0.43 -1.8
277,842 + Atu3260 0.46 -0.7
277,877 + Atu3260 0.49 +0.2
278,012 + Atu3260 0.63 +1.2
278,078 - Atu3260 0.70 -0.0
278,097 - Atu3260 0.71 -2.8
278,108 - Atu3260 0.73 +0.3
278,108 - Atu3260 0.73 +0.1
278,108 - Atu3260 0.73 +0.9
278,108 - Atu3260 0.73 +1.4
278,118 - Atu3260 0.74 +1.8
278,138 + Atu3260 0.76 -1.5
278,163 - Atu3260 0.78 +0.6
278,284 + -0.2
278,292 - +1.4
278,309 + +1.3
278,458 + -0.1
278,535 + +2.4
278,538 + +0.9
278,646 - Atu3261 0.14 -0.8
278,698 - Atu3261 0.16 +1.6
278,874 - Atu3261 0.26 +0.2
278,891 + Atu3261 0.27 -0.8
278,910 - Atu3261 0.28 -1.2
278,936 + Atu3261 0.30 -1.5
279,016 + Atu3261 0.34 -0.3
279,176 + Atu3261 0.43 +0.8
279,376 - Atu3261 0.54 +1.0
279,384 - Atu3261 0.54 +0.8
279,438 + Atu3261 0.57 +1.1
279,453 + Atu3261 0.58 -1.8
279,590 + Atu3261 0.65 -0.8
279,598 - Atu3261 0.66 -1.0
279,679 + Atu3261 0.70 -2.6
279,695 + Atu3261 0.71 +0.8
279,833 + Atu3261 0.79 +1.7
279,854 + Atu3261 0.80 +0.3
279,857 - Atu3261 0.80 +3.4
279,866 + Atu3261 0.81 -1.6
280,030 + Atu3261 0.90 +2.1
280,038 - +1.0
280,058 + -0.0
280,082 + +0.5
280,090 - +0.4
280,100 - +0.5
280,117 + -0.2
280,222 - -0.1
280,282 + +2.1
280,334 - -0.1
280,340 + +0.5
280,374 + -1.1
280,382 - -2.5
280,510 - Atu3262 0.10 -0.9
280,585 + Atu3262 0.14 -0.2
280,618 + Atu3262 0.16 -0.4
280,618 + Atu3262 0.16 +1.4
280,743 + Atu3262 0.23 +3.1
280,803 - Atu3262 0.26 +1.2
280,820 - Atu3262 0.27 -0.4
280,954 - Atu3262 0.35 -2.0
280,956 + Atu3262 0.35 -0.8
281,015 - Atu3262 0.38 +0.4
281,017 + Atu3262 0.38 -0.7
281,017 + Atu3262 0.38 +0.9
281,017 + Atu3262 0.38 +1.2
281,064 + Atu3262 0.41 +0.4
281,153 - Atu3262 0.45 -0.1
281,168 + Atu3262 0.46 -0.3

Or see this region's nucleotide sequence