Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1896 and Atu1897 are separated by 8 nucleotides Atu1897 and Atu1898 are separated by 14 nucleotides Atu1898 and Atu1899 are separated by 119 nucleotides
Atu1896: Atu1896 - hypothetical protein, at 1,873,209 to 1,873,415
Atu1896
Atu1897: Atu1897 - short chain dehydrogenase, at 1,873,424 to 1,874,212
Atu1897
Atu1898: Atu1898 - ABC transporter, nucleotide binding/ATPase protein (ribose), at 1,874,227 to 1,875,705
Atu1898
Atu1899: Atu1899 - ABC transporter, substrate binding protein (ribose), at 1,875,825 to 1,876,754
Atu1899
Position (kb) 1874
1875
1876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1873.258 kb on - strand, within Atu1896 at 1873.306 kb on - strand, within Atu1896 at 1873.344 kb on + strand, within Atu1896 at 1873.355 kb on + strand, within Atu1896 at 1873.377 kb on - strand, within Atu1896 at 1873.429 kb on - strand at 1873.464 kb on - strand at 1873.465 kb on - strand at 1873.589 kb on - strand, within Atu1897 at 1873.589 kb on - strand, within Atu1897 at 1873.611 kb on - strand, within Atu1897 at 1873.619 kb on - strand, within Atu1897 at 1873.830 kb on + strand, within Atu1897 at 1873.920 kb on - strand, within Atu1897 at 1874.101 kb on + strand, within Atu1897 at 1874.109 kb on - strand, within Atu1897 at 1874.145 kb on + strand at 1874.354 kb on - strand at 1874.354 kb on - strand at 1874.449 kb on + strand, within Atu1898 at 1874.531 kb on - strand, within Atu1898 at 1874.718 kb on - strand, within Atu1898 at 1874.773 kb on + strand, within Atu1898 at 1874.844 kb on + strand, within Atu1898 at 1874.914 kb on + strand, within Atu1898 at 1875.098 kb on - strand, within Atu1898 at 1875.283 kb on + strand, within Atu1898 at 1875.298 kb on - strand, within Atu1898 at 1875.318 kb on - strand, within Atu1898 at 1875.318 kb on - strand, within Atu1898 at 1875.323 kb on - strand, within Atu1898 at 1875.342 kb on - strand, within Atu1898 at 1875.507 kb on + strand, within Atu1898 at 1875.622 kb on + strand at 1875.640 kb on + strand at 1875.647 kb on + strand at 1875.648 kb on - strand at 1875.742 kb on + strand at 1875.822 kb on - strand at 1875.831 kb on - strand at 1875.885 kb on - strand at 1875.903 kb on - strand at 1875.933 kb on + strand, within Atu1899 at 1875.933 kb on + strand, within Atu1899 at 1875.963 kb on - strand, within Atu1899 at 1876.149 kb on + strand, within Atu1899 at 1876.227 kb on + strand, within Atu1899 at 1876.356 kb on - strand, within Atu1899 at 1876.495 kb on - strand, within Atu1899 at 1876.626 kb on - strand, within Atu1899
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 1,873,258 - Atu1896 0.24 -0.4 1,873,306 - Atu1896 0.47 +1.8 1,873,344 + Atu1896 0.65 -0.5 1,873,355 + Atu1896 0.71 +0.5 1,873,377 - Atu1896 0.81 +0.4 1,873,429 - +1.9 1,873,464 - -0.2 1,873,465 - -2.1 1,873,589 - Atu1897 0.21 -0.6 1,873,589 - Atu1897 0.21 +3.7 1,873,611 - Atu1897 0.24 +0.2 1,873,619 - Atu1897 0.25 -2.1 1,873,830 + Atu1897 0.51 -0.3 1,873,920 - Atu1897 0.63 -0.9 1,874,101 + Atu1897 0.86 -2.3 1,874,109 - Atu1897 0.87 +2.9 1,874,145 + +0.0 1,874,354 - -0.9 1,874,354 - +0.5 1,874,449 + Atu1898 0.15 -0.2 1,874,531 - Atu1898 0.21 +0.4 1,874,718 - Atu1898 0.33 +0.1 1,874,773 + Atu1898 0.37 +0.1 1,874,844 + Atu1898 0.42 -1.1 1,874,914 + Atu1898 0.46 +1.0 1,875,098 - Atu1898 0.59 -1.0 1,875,283 + Atu1898 0.71 -1.6 1,875,298 - Atu1898 0.72 +0.5 1,875,318 - Atu1898 0.74 -0.1 1,875,318 - Atu1898 0.74 -1.0 1,875,323 - Atu1898 0.74 -1.0 1,875,342 - Atu1898 0.75 -1.3 1,875,507 + Atu1898 0.87 +0.1 1,875,622 + -0.9 1,875,640 + +2.9 1,875,647 + +0.4 1,875,648 - -0.1 1,875,742 + +0.4 1,875,822 - +0.6 1,875,831 - +0.7 1,875,885 - -0.9 1,875,903 - -2.1 1,875,933 + Atu1899 0.12 +0.4 1,875,933 + Atu1899 0.12 -1.2 1,875,963 - Atu1899 0.15 -1.4 1,876,149 + Atu1899 0.35 -1.3 1,876,227 + Atu1899 0.43 -1.4 1,876,356 - Atu1899 0.57 +0.7 1,876,495 - Atu1899 0.72 -0.4 1,876,626 - Atu1899 0.86 +0.3
Or see this region's nucleotide sequence