Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0991 and Atu0992 are separated by 34 nucleotides Atu0992 and Atu0993 are separated by 61 nucleotides Atu0993 and Atu0994 are separated by 350 nucleotides
Atu0991: Atu0991 - cation efflux system component, at 986,763 to 987,683
Atu0991
Atu0992: Atu0992 - permease, at 987,718 to 988,587
Atu0992
Atu0993: Atu0993 - transcriptional regulator, TetR family, at 988,649 to 989,275
Atu0993
Atu0994: Atu0994 - electrotransfer ubiquinone oxidoreductase, at 989,626 to 991,290
Atu0994
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.671 kb on - strand at 987.703 kb on + strand at 987.711 kb on - strand at 987.713 kb on + strand at 987.725 kb on + strand at 987.725 kb on + strand at 987.733 kb on - strand at 987.793 kb on - strand at 987.840 kb on - strand, within Atu0992 at 987.842 kb on + strand, within Atu0992 at 987.885 kb on - strand, within Atu0992 at 987.905 kb on + strand, within Atu0992 at 987.923 kb on - strand, within Atu0992 at 987.933 kb on - strand, within Atu0992 at 988.024 kb on + strand, within Atu0992 at 988.092 kb on + strand, within Atu0992 at 988.117 kb on - strand, within Atu0992 at 988.136 kb on + strand, within Atu0992 at 988.155 kb on - strand, within Atu0992 at 988.226 kb on - strand, within Atu0992 at 988.525 kb on - strand at 988.742 kb on + strand, within Atu0993 at 988.947 kb on - strand, within Atu0993 at 988.976 kb on + strand, within Atu0993 at 988.976 kb on + strand, within Atu0993 at 988.984 kb on - strand, within Atu0993 at 988.989 kb on - strand, within Atu0993 at 989.117 kb on - strand, within Atu0993 at 989.145 kb on - strand, within Atu0993 at 989.161 kb on + strand, within Atu0993 at 989.264 kb on - strand at 989.303 kb on - strand at 989.384 kb on - strand at 989.489 kb on - strand at 989.511 kb on + strand at 989.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 987,671 - -1.5 987,703 + +2.2 987,711 - -0.0 987,713 + +0.3 987,725 + -0.2 987,725 + +1.6 987,733 - -0.1 987,793 - +0.8 987,840 - Atu0992 0.14 -0.6 987,842 + Atu0992 0.14 -0.1 987,885 - Atu0992 0.19 -1.2 987,905 + Atu0992 0.21 +0.8 987,923 - Atu0992 0.24 -0.6 987,933 - Atu0992 0.25 +0.3 988,024 + Atu0992 0.35 +0.4 988,092 + Atu0992 0.43 +0.3 988,117 - Atu0992 0.46 +1.3 988,136 + Atu0992 0.48 +0.1 988,155 - Atu0992 0.50 -0.3 988,226 - Atu0992 0.58 +2.2 988,525 - +1.0 988,742 + Atu0993 0.15 -0.4 988,947 - Atu0993 0.48 +1.2 988,976 + Atu0993 0.52 -0.0 988,976 + Atu0993 0.52 +1.0 988,984 - Atu0993 0.53 +0.1 988,989 - Atu0993 0.54 -2.4 989,117 - Atu0993 0.75 -3.0 989,145 - Atu0993 0.79 +1.3 989,161 + Atu0993 0.82 +0.4 989,264 - -0.3 989,303 - -0.2 989,384 - -0.4 989,489 - -1.1 989,511 + -2.1 989,592 - +1.1
Or see this region's nucleotide sequence