Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0699 and Atu0700 are separated by 360 nucleotides Atu0700 and Atu0701 are separated by 86 nucleotides
Atu0699: Atu0699 - DNA mismatch repair protein MutL, at 697,138 to 698,958
Atu0699
Atu0700: Atu0700 - two component sensor kinase, at 699,319 to 700,986
Atu0700
Atu0701: Atu0701 - GGDEF family protein, at 701,073 to 702,425
Atu0701
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 698.319 kb on - strand, within Atu0699 at 698.393 kb on + strand, within Atu0699 at 698.568 kb on + strand, within Atu0699 at 698.605 kb on + strand, within Atu0699 at 698.610 kb on + strand, within Atu0699 at 698.618 kb on - strand, within Atu0699 at 698.633 kb on - strand, within Atu0699 at 698.665 kb on + strand, within Atu0699 at 698.666 kb on - strand, within Atu0699 at 698.738 kb on + strand, within Atu0699 at 698.760 kb on - strand, within Atu0699 at 698.772 kb on + strand, within Atu0699 at 698.805 kb on - strand at 698.813 kb on - strand at 698.892 kb on + strand at 699.067 kb on + strand at 699.076 kb on + strand at 699.105 kb on - strand at 699.107 kb on + strand at 699.178 kb on - strand at 699.202 kb on - strand at 699.207 kb on - strand at 699.272 kb on - strand at 699.272 kb on - strand at 699.286 kb on + strand at 699.292 kb on + strand at 699.341 kb on + strand at 699.386 kb on - strand at 699.451 kb on - strand at 699.538 kb on - strand, within Atu0700 at 699.554 kb on - strand, within Atu0700 at 699.558 kb on + strand, within Atu0700 at 699.615 kb on + strand, within Atu0700 at 699.620 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.655 kb on + strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.676 kb on + strand, within Atu0700 at 699.684 kb on - strand, within Atu0700 at 699.756 kb on - strand, within Atu0700 at 699.773 kb on - strand, within Atu0700 at 699.877 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.970 kb on + strand, within Atu0700 at 699.978 kb on - strand, within Atu0700 at 699.978 kb on - strand, within Atu0700 at 699.978 kb on - strand, within Atu0700 at 699.978 kb on - strand, within Atu0700 at 700.024 kb on + strand, within Atu0700 at 700.032 kb on - strand, within Atu0700 at 700.091 kb on + strand, within Atu0700 at 700.116 kb on + strand, within Atu0700 at 700.121 kb on + strand, within Atu0700 at 700.177 kb on + strand, within Atu0700 at 700.185 kb on - strand, within Atu0700 at 700.192 kb on - strand, within Atu0700 at 700.339 kb on - strand, within Atu0700 at 700.380 kb on - strand, within Atu0700 at 700.387 kb on - strand, within Atu0700 at 700.512 kb on + strand, within Atu0700 at 700.618 kb on - strand, within Atu0700 at 700.674 kb on - strand, within Atu0700 at 700.846 kb on + strand at 700.854 kb on - strand at 700.905 kb on + strand at 700.905 kb on + strand at 701.012 kb on - strand at 701.023 kb on - strand at 701.054 kb on + strand at 701.132 kb on - strand at 701.142 kb on - strand at 701.142 kb on - strand at 701.162 kb on + strand at 701.177 kb on + strand at 701.438 kb on + strand, within Atu0701 at 701.446 kb on - strand, within Atu0701 at 701.489 kb on + strand, within Atu0701 at 701.654 kb on + strand, within Atu0701 at 701.746 kb on + strand, within Atu0701 at 701.885 kb on + strand, within Atu0701 at 701.888 kb on - strand, within Atu0701 at 701.888 kb on - strand, within Atu0701 at 701.893 kb on - strand, within Atu0701 at 701.903 kb on + strand, within Atu0701
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 698,319 - Atu0699 0.65 +0.0 698,393 + Atu0699 0.69 -1.6 698,568 + Atu0699 0.79 +0.3 698,605 + Atu0699 0.81 -3.1 698,610 + Atu0699 0.81 -0.9 698,618 - Atu0699 0.81 +0.3 698,633 - Atu0699 0.82 -0.2 698,665 + Atu0699 0.84 -0.4 698,666 - Atu0699 0.84 +0.8 698,738 + Atu0699 0.88 +0.8 698,760 - Atu0699 0.89 -1.5 698,772 + Atu0699 0.90 -0.3 698,805 - +0.9 698,813 - -1.2 698,892 + -1.4 699,067 + -1.0 699,076 + +1.9 699,105 - +0.7 699,107 + +1.2 699,178 - -1.2 699,202 - +0.2 699,207 - +1.2 699,272 - -1.7 699,272 - +0.4 699,286 + -0.5 699,292 + -0.9 699,341 + +0.7 699,386 - +1.9 699,451 - -2.0 699,538 - Atu0700 0.13 +0.8 699,554 - Atu0700 0.14 +0.3 699,558 + Atu0700 0.14 +1.9 699,615 + Atu0700 0.18 -0.3 699,620 + Atu0700 0.18 -0.8 699,648 + Atu0700 0.20 +6.0 699,648 + Atu0700 0.20 -0.3 699,648 + Atu0700 0.20 +0.5 699,648 + Atu0700 0.20 -1.0 699,648 + Atu0700 0.20 +0.2 699,655 + Atu0700 0.20 +1.8 699,656 - Atu0700 0.20 +1.9 699,656 - Atu0700 0.20 +0.4 699,656 - Atu0700 0.20 +0.3 699,656 - Atu0700 0.20 -0.8 699,656 - Atu0700 0.20 +1.4 699,676 + Atu0700 0.21 -0.4 699,684 - Atu0700 0.22 -1.2 699,756 - Atu0700 0.26 -1.1 699,773 - Atu0700 0.27 +2.1 699,877 + Atu0700 0.33 -1.3 699,970 + Atu0700 0.39 -0.6 699,970 + Atu0700 0.39 +1.0 699,970 + Atu0700 0.39 +0.3 699,970 + Atu0700 0.39 -2.3 699,970 + Atu0700 0.39 +0.7 699,970 + Atu0700 0.39 +0.6 699,970 + Atu0700 0.39 +0.7 699,978 - Atu0700 0.40 +0.0 699,978 - Atu0700 0.40 -0.8 699,978 - Atu0700 0.40 -0.0 699,978 - Atu0700 0.40 +0.6 700,024 + Atu0700 0.42 +0.4 700,032 - Atu0700 0.43 -0.6 700,091 + Atu0700 0.46 -1.3 700,116 + Atu0700 0.48 +0.9 700,121 + Atu0700 0.48 -2.5 700,177 + Atu0700 0.51 +1.3 700,185 - Atu0700 0.52 +0.6 700,192 - Atu0700 0.52 +0.0 700,339 - Atu0700 0.61 +1.4 700,380 - Atu0700 0.64 +0.2 700,387 - Atu0700 0.64 -0.5 700,512 + Atu0700 0.72 -0.3 700,618 - Atu0700 0.78 +0.6 700,674 - Atu0700 0.81 +0.8 700,846 + +0.2 700,854 - -0.9 700,905 + +0.6 700,905 + +0.1 701,012 - -2.3 701,023 - -0.6 701,054 + +0.3 701,132 - -0.7 701,142 - -0.3 701,142 - -0.1 701,162 + +0.8 701,177 + -0.6 701,438 + Atu0701 0.27 +0.0 701,446 - Atu0701 0.28 +1.5 701,489 + Atu0701 0.31 +1.6 701,654 + Atu0701 0.43 -0.8 701,746 + Atu0701 0.50 +0.7 701,885 + Atu0701 0.60 +1.4 701,888 - Atu0701 0.60 +2.7 701,888 - Atu0701 0.60 +0.1 701,893 - Atu0701 0.61 -0.1 701,903 + Atu0701 0.61 +0.2
Or see this region's nucleotide sequence