Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3543 and Atu3544 are separated by 326 nucleotides Atu3544 and Atu3545 are separated by 70 nucleotides Atu3545 and Atu3546 are separated by 228 nucleotides
Atu3543: Atu3543 - dihydroxyacetone kinase, at 590,970 to 592,664
Atu3543
Atu3544: Atu3544 - arsenical pump membrane protein, at 592,991 to 594,244
Atu3544
Atu3545: Atu3545 - hypothetical protein, at 594,315 to 594,644
Atu3545
Atu3546: Atu3546 - hypothetical protein, at 594,873 to 596,891
Atu3546
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 592.130 kb on - strand, within Atu3543 at 592.143 kb on + strand, within Atu3543 at 592.234 kb on + strand, within Atu3543 at 592.234 kb on - strand, within Atu3543 at 592.242 kb on + strand, within Atu3543 at 592.339 kb on + strand, within Atu3543 at 592.384 kb on + strand, within Atu3543 at 592.395 kb on + strand, within Atu3543 at 592.503 kb on - strand at 592.515 kb on - strand at 592.525 kb on - strand at 592.554 kb on + strand at 592.562 kb on - strand at 592.631 kb on - strand at 592.631 kb on - strand at 592.673 kb on - strand at 592.681 kb on - strand at 592.691 kb on - strand at 592.746 kb on - strand at 592.746 kb on - strand at 592.809 kb on - strand at 592.813 kb on + strand at 592.816 kb on + strand at 592.818 kb on + strand at 592.824 kb on + strand at 592.834 kb on - strand at 592.851 kb on - strand at 592.869 kb on + strand at 592.894 kb on - strand at 592.904 kb on + strand at 593.000 kb on + strand at 593.050 kb on - strand at 593.096 kb on + strand at 593.104 kb on - strand at 593.119 kb on + strand, within Atu3544 at 593.149 kb on + strand, within Atu3544 at 593.149 kb on + strand, within Atu3544 at 593.157 kb on - strand, within Atu3544 at 593.157 kb on - strand, within Atu3544 at 593.157 kb on - strand, within Atu3544 at 593.173 kb on + strand, within Atu3544 at 593.181 kb on - strand, within Atu3544 at 593.192 kb on - strand, within Atu3544 at 593.196 kb on + strand, within Atu3544 at 593.259 kb on - strand, within Atu3544 at 593.270 kb on - strand, within Atu3544 at 593.297 kb on - strand, within Atu3544 at 593.411 kb on + strand, within Atu3544 at 593.723 kb on + strand, within Atu3544 at 593.723 kb on + strand, within Atu3544 at 593.723 kb on + strand, within Atu3544 at 593.723 kb on + strand, within Atu3544 at 593.723 kb on + strand, within Atu3544 at 593.766 kb on + strand, within Atu3544 at 593.773 kb on - strand, within Atu3544 at 593.806 kb on + strand, within Atu3544 at 593.823 kb on + strand, within Atu3544 at 593.831 kb on - strand, within Atu3544 at 594.041 kb on + strand, within Atu3544 at 594.065 kb on + strand, within Atu3544 at 594.073 kb on - strand, within Atu3544 at 594.073 kb on - strand, within Atu3544 at 594.161 kb on - strand at 594.177 kb on + strand at 594.209 kb on + strand at 594.211 kb on - strand at 594.275 kb on - strand at 594.280 kb on - strand at 594.416 kb on - strand, within Atu3545 at 594.441 kb on - strand, within Atu3545 at 594.463 kb on - strand, within Atu3545 at 594.463 kb on - strand, within Atu3545 at 594.505 kb on + strand, within Atu3545 at 594.551 kb on + strand, within Atu3545 at 594.556 kb on + strand, within Atu3545 at 594.617 kb on - strand at 594.673 kb on - strand at 594.758 kb on - strand at 594.826 kb on - strand at 594.837 kb on - strand at 594.888 kb on + strand at 594.891 kb on - strand at 594.908 kb on + strand at 594.916 kb on - strand at 594.916 kb on - strand at 594.923 kb on - strand at 594.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 592,130 - Atu3543 0.68 +0.7 592,143 + Atu3543 0.69 +2.2 592,234 + Atu3543 0.75 +0.6 592,234 - Atu3543 0.75 +0.8 592,242 + Atu3543 0.75 -0.6 592,339 + Atu3543 0.81 -0.5 592,384 + Atu3543 0.83 -0.2 592,395 + Atu3543 0.84 -0.5 592,503 - +0.1 592,515 - +1.9 592,525 - -2.0 592,554 + -0.3 592,562 - +0.2 592,631 - +0.5 592,631 - -0.6 592,673 - -1.8 592,681 - +0.4 592,691 - -0.4 592,746 - +0.4 592,746 - +1.8 592,809 - -2.1 592,813 + +0.8 592,816 + +0.5 592,818 + +0.1 592,824 + -0.2 592,834 - -2.7 592,851 - -1.0 592,869 + -0.7 592,894 - +2.0 592,904 + +1.7 593,000 + -3.3 593,050 - -0.7 593,096 + -2.8 593,104 - -4.8 593,119 + Atu3544 0.10 -4.5 593,149 + Atu3544 0.13 -0.7 593,149 + Atu3544 0.13 -6.1 593,157 - Atu3544 0.13 -3.2 593,157 - Atu3544 0.13 -2.9 593,157 - Atu3544 0.13 -2.9 593,173 + Atu3544 0.15 -6.2 593,181 - Atu3544 0.15 -1.8 593,192 - Atu3544 0.16 -3.2 593,196 + Atu3544 0.16 -6.3 593,259 - Atu3544 0.21 -3.0 593,270 - Atu3544 0.22 -5.0 593,297 - Atu3544 0.24 -2.9 593,411 + Atu3544 0.33 -5.1 593,723 + Atu3544 0.58 -2.0 593,723 + Atu3544 0.58 -3.1 593,723 + Atu3544 0.58 -1.8 593,723 + Atu3544 0.58 -5.0 593,723 + Atu3544 0.58 -4.0 593,766 + Atu3544 0.62 -4.0 593,773 - Atu3544 0.62 -3.8 593,806 + Atu3544 0.65 -5.0 593,823 + Atu3544 0.66 -3.7 593,831 - Atu3544 0.67 -2.0 594,041 + Atu3544 0.84 -6.0 594,065 + Atu3544 0.86 -3.4 594,073 - Atu3544 0.86 -3.9 594,073 - Atu3544 0.86 -5.0 594,161 - -6.3 594,177 + -6.0 594,209 + +0.4 594,211 - -4.0 594,275 - +0.3 594,280 - -1.3 594,416 - Atu3545 0.31 +0.4 594,441 - Atu3545 0.38 +1.1 594,463 - Atu3545 0.45 +1.4 594,463 - Atu3545 0.45 +0.7 594,505 + Atu3545 0.58 -1.1 594,551 + Atu3545 0.72 -0.8 594,556 + Atu3545 0.73 +0.7 594,617 - +0.2 594,673 - +0.8 594,758 - -2.0 594,826 - +0.1 594,837 - +0.0 594,888 + +0.2 594,891 - -0.4 594,908 + +0.4 594,916 - +0.4 594,916 - +1.4 594,923 - +0.3 594,984 - +0.9
Or see this region's nucleotide sequence