Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3150 and Atu3151 are separated by 257 nucleotides Atu3151 and Atu3152 are separated by 92 nucleotides
Atu3150: Atu3150 - sugar ABC transporter permease, at 158,321 to 159,181
Atu3150
Atu3151: Atu3151 - sugar ABC transporter substrate-binding protein, at 159,439 to 160,710
Atu3151
Atu3152: Atu3152 - AraC family transcriptional regulator, at 160,803 to 161,693
Atu3152
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 158.455 kb on - strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.580 kb on - strand, within Atu3150 at 158.687 kb on - strand, within Atu3150 at 158.778 kb on + strand, within Atu3150 at 158.783 kb on - strand, within Atu3150 at 158.925 kb on + strand, within Atu3150 at 159.007 kb on - strand, within Atu3150 at 159.057 kb on + strand, within Atu3150 at 159.111 kb on + strand at 159.119 kb on - strand at 159.253 kb on - strand at 159.285 kb on - strand at 159.380 kb on + strand at 159.382 kb on + strand at 159.431 kb on - strand at 159.444 kb on - strand at 159.446 kb on + strand at 159.454 kb on - strand at 159.599 kb on + strand, within Atu3151 at 159.621 kb on + strand, within Atu3151 at 159.682 kb on - strand, within Atu3151 at 159.753 kb on + strand, within Atu3151 at 159.795 kb on + strand, within Atu3151 at 159.803 kb on - strand, within Atu3151 at 159.826 kb on + strand, within Atu3151 at 159.902 kb on - strand, within Atu3151 at 159.902 kb on - strand, within Atu3151 at 159.928 kb on - strand, within Atu3151 at 159.940 kb on + strand, within Atu3151 at 159.943 kb on - strand, within Atu3151 at 159.953 kb on + strand, within Atu3151 at 160.058 kb on + strand, within Atu3151 at 160.058 kb on + strand, within Atu3151 at 160.108 kb on - strand, within Atu3151 at 160.187 kb on + strand, within Atu3151 at 160.233 kb on - strand, within Atu3151 at 160.645 kb on - strand at 160.654 kb on + strand at 160.942 kb on - strand, within Atu3152 at 160.963 kb on - strand, within Atu3152 at 161.048 kb on - strand, within Atu3152 at 161.144 kb on + strand, within Atu3152 at 161.240 kb on - strand, within Atu3152 at 161.244 kb on + strand, within Atu3152 at 161.244 kb on + strand, within Atu3152 at 161.276 kb on - strand, within Atu3152 at 161.456 kb on + strand, within Atu3152 at 161.512 kb on - strand, within Atu3152 at 161.682 kb on + strand at 161.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 158,455 - Atu3150 0.16 +0.7 158,562 + Atu3150 0.28 -1.0 158,562 + Atu3150 0.28 +0.7 158,580 - Atu3150 0.30 -0.5 158,687 - Atu3150 0.43 +0.3 158,778 + Atu3150 0.53 -0.9 158,783 - Atu3150 0.54 -0.5 158,925 + Atu3150 0.70 -0.0 159,007 - Atu3150 0.80 -0.8 159,057 + Atu3150 0.85 -0.1 159,111 + +0.4 159,119 - +0.8 159,253 - +0.3 159,285 - -0.3 159,380 + -2.3 159,382 + +0.2 159,431 - +0.6 159,444 - +0.9 159,446 + +3.9 159,454 - +1.1 159,599 + Atu3151 0.13 +1.1 159,621 + Atu3151 0.14 -1.1 159,682 - Atu3151 0.19 +0.8 159,753 + Atu3151 0.25 -2.7 159,795 + Atu3151 0.28 +0.2 159,803 - Atu3151 0.29 +1.3 159,826 + Atu3151 0.30 +2.1 159,902 - Atu3151 0.36 +0.5 159,902 - Atu3151 0.36 +0.9 159,928 - Atu3151 0.38 +0.9 159,940 + Atu3151 0.39 -0.1 159,943 - Atu3151 0.40 +1.6 159,953 + Atu3151 0.40 -0.1 160,058 + Atu3151 0.49 +2.9 160,058 + Atu3151 0.49 +1.6 160,108 - Atu3151 0.53 +1.0 160,187 + Atu3151 0.59 +0.3 160,233 - Atu3151 0.62 -0.4 160,645 - -1.3 160,654 + -0.1 160,942 - Atu3152 0.16 +0.4 160,963 - Atu3152 0.18 +1.1 161,048 - Atu3152 0.27 -0.7 161,144 + Atu3152 0.38 -0.8 161,240 - Atu3152 0.49 -0.0 161,244 + Atu3152 0.49 +0.7 161,244 + Atu3152 0.49 +1.5 161,276 - Atu3152 0.53 -0.5 161,456 + Atu3152 0.73 +0.4 161,512 - Atu3152 0.80 -0.2 161,682 + +0.4 161,693 + +0.3
Or see this region's nucleotide sequence