Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0832 and Atu8139 are separated by 4 nucleotides Atu8139 and Atu0834 are separated by 28 nucleotides Atu0834 and Atu0835 are separated by 137 nucleotides Atu0835 and Atu0836 are separated by 229 nucleotides
Atu0832: Atu0832 - chloride channel protein, at 831,362 to 832,678
Atu0832
Atu8139: Atu8139 - hypothetical protein, at 832,683 to 833,480
Atu8139
Atu0834: Atu0834 - hypothetical protein, at 833,509 to 834,507
Atu0834
Atu0835: Atu0835 - glutathione S-transferase, at 834,645 to 835,265
Atu0835
Atu0836: Atu0836 - Glutathione-S-transferase, at 835,495 to 836,154
Atu0836
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 832.532 kb on - strand, within Atu0832 at 832.626 kb on + strand at 832.658 kb on + strand at 832.658 kb on + strand at 832.673 kb on + strand at 832.837 kb on - strand, within Atu8139 at 832.949 kb on - strand, within Atu8139 at 832.949 kb on - strand, within Atu8139 at 832.971 kb on - strand, within Atu8139 at 832.989 kb on - strand, within Atu8139 at 833.011 kb on - strand, within Atu8139 at 833.077 kb on + strand, within Atu8139 at 833.137 kb on - strand, within Atu8139 at 833.171 kb on + strand, within Atu8139 at 833.206 kb on + strand, within Atu8139 at 833.206 kb on + strand, within Atu8139 at 833.206 kb on + strand, within Atu8139 at 833.214 kb on - strand, within Atu8139 at 833.214 kb on - strand, within Atu8139 at 833.309 kb on - strand, within Atu8139 at 833.626 kb on - strand, within Atu0834 at 833.680 kb on + strand, within Atu0834 at 833.733 kb on + strand, within Atu0834 at 833.787 kb on - strand, within Atu0834 at 833.790 kb on + strand, within Atu0834 at 833.826 kb on - strand, within Atu0834 at 833.828 kb on - strand, within Atu0834 at 833.868 kb on + strand, within Atu0834 at 833.871 kb on - strand, within Atu0834 at 833.959 kb on + strand, within Atu0834 at 833.967 kb on - strand, within Atu0834 at 833.976 kb on - strand, within Atu0834 at 833.990 kb on - strand, within Atu0834 at 833.997 kb on - strand, within Atu0834 at 834.079 kb on - strand, within Atu0834 at 834.089 kb on - strand, within Atu0834 at 834.104 kb on - strand, within Atu0834 at 834.223 kb on + strand, within Atu0834 at 834.240 kb on + strand, within Atu0834 at 834.375 kb on + strand, within Atu0834 at 834.406 kb on - strand, within Atu0834 at 834.413 kb on + strand at 834.562 kb on - strand at 834.571 kb on - strand at 834.724 kb on - strand, within Atu0835 at 834.724 kb on - strand, within Atu0835 at 834.724 kb on - strand, within Atu0835 at 834.952 kb on + strand, within Atu0835 at 834.970 kb on + strand, within Atu0835 at 834.999 kb on + strand, within Atu0835 at 835.022 kb on + strand, within Atu0835 at 835.030 kb on - strand, within Atu0835 at 835.057 kb on + strand, within Atu0835 at 835.057 kb on + strand, within Atu0835 at 835.057 kb on + strand, within Atu0835 at 835.090 kb on + strand, within Atu0835 at 835.090 kb on + strand, within Atu0835 at 835.090 kb on + strand, within Atu0835 at 835.098 kb on + strand, within Atu0835 at 835.098 kb on - strand, within Atu0835 at 835.103 kb on + strand, within Atu0835 at 835.106 kb on - strand, within Atu0835 at 835.194 kb on - strand, within Atu0835 at 835.202 kb on - strand, within Atu0835 at 835.344 kb on - strand at 835.375 kb on - strand at 835.377 kb on + strand at 835.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 832,532 - Atu0832 0.89 -0.1 832,626 + -1.0 832,658 + +0.3 832,658 + -0.1 832,673 + +1.3 832,837 - Atu8139 0.19 -1.0 832,949 - Atu8139 0.33 -1.2 832,949 - Atu8139 0.33 -0.1 832,971 - Atu8139 0.36 -0.6 832,989 - Atu8139 0.38 -0.1 833,011 - Atu8139 0.41 +0.2 833,077 + Atu8139 0.49 -0.5 833,137 - Atu8139 0.57 +0.5 833,171 + Atu8139 0.61 -1.2 833,206 + Atu8139 0.66 -0.6 833,206 + Atu8139 0.66 -1.0 833,206 + Atu8139 0.66 -1.9 833,214 - Atu8139 0.67 -2.3 833,214 - Atu8139 0.67 +0.3 833,309 - Atu8139 0.78 -2.0 833,626 - Atu0834 0.12 +0.3 833,680 + Atu0834 0.17 -0.0 833,733 + Atu0834 0.22 -3.1 833,787 - Atu0834 0.28 +2.1 833,790 + Atu0834 0.28 +0.5 833,826 - Atu0834 0.32 -0.6 833,828 - Atu0834 0.32 -0.8 833,868 + Atu0834 0.36 -0.2 833,871 - Atu0834 0.36 +0.9 833,959 + Atu0834 0.45 -0.5 833,967 - Atu0834 0.46 +0.4 833,976 - Atu0834 0.47 +0.1 833,990 - Atu0834 0.48 -1.0 833,997 - Atu0834 0.49 -1.0 834,079 - Atu0834 0.57 +1.2 834,089 - Atu0834 0.58 +0.9 834,104 - Atu0834 0.60 -2.8 834,223 + Atu0834 0.71 -3.0 834,240 + Atu0834 0.73 -0.3 834,375 + Atu0834 0.87 +0.5 834,406 - Atu0834 0.90 +0.7 834,413 + -0.3 834,562 - +1.0 834,571 - +0.6 834,724 - Atu0835 0.13 +1.2 834,724 - Atu0835 0.13 +0.6 834,724 - Atu0835 0.13 -1.1 834,952 + Atu0835 0.49 +0.8 834,970 + Atu0835 0.52 +0.9 834,999 + Atu0835 0.57 +0.5 835,022 + Atu0835 0.61 +0.7 835,030 - Atu0835 0.62 +3.3 835,057 + Atu0835 0.66 +0.0 835,057 + Atu0835 0.66 -0.0 835,057 + Atu0835 0.66 +0.6 835,090 + Atu0835 0.72 +0.4 835,090 + Atu0835 0.72 +0.2 835,090 + Atu0835 0.72 +1.2 835,098 + Atu0835 0.73 +0.2 835,098 - Atu0835 0.73 -0.3 835,103 + Atu0835 0.74 +2.7 835,106 - Atu0835 0.74 +0.2 835,194 - Atu0835 0.88 +0.2 835,202 - Atu0835 0.90 -0.3 835,344 - -0.9 835,375 - -0.3 835,377 + +0.1 835,394 + +0.2
Or see this region's nucleotide sequence