Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5516 and Atu5517 are separated by 367 nucleotides Atu5517 and Atu5518 are separated by 35 nucleotides
Atu5516: Atu5516 - hypothetical protein, at 507,596 to 508,975
Atu5516
Atu5517: Atu5517 - hypothetical protein, at 509,343 to 509,603
Atu5517
Atu5518: Atu5518 - hypothetical protein, at 509,639 to 511,147
Atu5518
Position (kb) 509
510 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 508.390 kb on - strand, within Atu5516 at 508.392 kb on + strand, within Atu5516 at 508.423 kb on - strand, within Atu5516 at 508.505 kb on + strand, within Atu5516 at 508.533 kb on + strand, within Atu5516 at 508.548 kb on + strand, within Atu5516 at 508.556 kb on - strand, within Atu5516 at 508.556 kb on - strand, within Atu5516 at 508.603 kb on + strand, within Atu5516 at 508.608 kb on + strand, within Atu5516 at 508.608 kb on + strand, within Atu5516 at 508.608 kb on + strand, within Atu5516 at 508.611 kb on - strand, within Atu5516 at 508.616 kb on - strand, within Atu5516 at 508.616 kb on - strand, within Atu5516 at 508.616 kb on - strand, within Atu5516 at 508.641 kb on - strand, within Atu5516 at 508.647 kb on + strand, within Atu5516 at 508.720 kb on + strand, within Atu5516 at 508.758 kb on + strand, within Atu5516 at 508.813 kb on + strand, within Atu5516 at 508.831 kb on - strand, within Atu5516 at 508.886 kb on + strand at 509.034 kb on + strand at 509.184 kb on + strand at 509.204 kb on + strand at 509.241 kb on + strand at 509.321 kb on - strand at 509.341 kb on + strand at 509.356 kb on - strand at 509.396 kb on + strand, within Atu5517 at 509.529 kb on + strand, within Atu5517 at 509.552 kb on + strand, within Atu5517 at 509.562 kb on - strand, within Atu5517 at 509.591 kb on + strand at 509.591 kb on + strand at 509.591 kb on + strand at 509.599 kb on - strand at 509.599 kb on - strand at 509.599 kb on - strand at 509.599 kb on - strand at 509.712 kb on + strand at 509.733 kb on + strand at 509.812 kb on + strand, within Atu5518 at 509.815 kb on + strand, within Atu5518 at 509.815 kb on + strand, within Atu5518 at 509.823 kb on - strand, within Atu5518 at 509.854 kb on + strand, within Atu5518 at 509.870 kb on + strand, within Atu5518 at 509.939 kb on - strand, within Atu5518 at 510.004 kb on - strand, within Atu5518 at 510.011 kb on + strand, within Atu5518 at 510.037 kb on - strand, within Atu5518 at 510.159 kb on - strand, within Atu5518 at 510.193 kb on + strand, within Atu5518 at 510.206 kb on - strand, within Atu5518 at 510.233 kb on + strand, within Atu5518 at 510.277 kb on - strand, within Atu5518 at 510.277 kb on - strand, within Atu5518 at 510.319 kb on + strand, within Atu5518 at 510.319 kb on + strand, within Atu5518 at 510.369 kb on + strand, within Atu5518 at 510.379 kb on - strand, within Atu5518 at 510.410 kb on - strand, within Atu5518 at 510.418 kb on + strand, within Atu5518 at 510.426 kb on - strand, within Atu5518 at 510.426 kb on - strand, within Atu5518 at 510.442 kb on - strand, within Atu5518 at 510.451 kb on + strand, within Atu5518 at 510.456 kb on + strand, within Atu5518 at 510.474 kb on - strand, within Atu5518 at 510.553 kb on + strand, within Atu5518
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 508,390 - Atu5516 0.58 +2.0 508,392 + Atu5516 0.58 -1.1 508,423 - Atu5516 0.60 -1.1 508,505 + Atu5516 0.66 -0.8 508,533 + Atu5516 0.68 -0.9 508,548 + Atu5516 0.69 +0.0 508,556 - Atu5516 0.70 -0.1 508,556 - Atu5516 0.70 +0.2 508,603 + Atu5516 0.73 +0.7 508,608 + Atu5516 0.73 -1.2 508,608 + Atu5516 0.73 +0.1 508,608 + Atu5516 0.73 -1.1 508,611 - Atu5516 0.74 -2.5 508,616 - Atu5516 0.74 -1.5 508,616 - Atu5516 0.74 -1.4 508,616 - Atu5516 0.74 -0.3 508,641 - Atu5516 0.76 +0.2 508,647 + Atu5516 0.76 -2.6 508,720 + Atu5516 0.81 +0.7 508,758 + Atu5516 0.84 -1.6 508,813 + Atu5516 0.88 +1.4 508,831 - Atu5516 0.89 -3.5 508,886 + +1.5 509,034 + +1.2 509,184 + -1.3 509,204 + -0.2 509,241 + +1.5 509,321 - +1.0 509,341 + +0.1 509,356 - +0.1 509,396 + Atu5517 0.20 -2.6 509,529 + Atu5517 0.71 +0.3 509,552 + Atu5517 0.80 -1.2 509,562 - Atu5517 0.84 -2.8 509,591 + +0.0 509,591 + +1.6 509,591 + -2.2 509,599 - +0.7 509,599 - -2.4 509,599 - +0.5 509,599 - -0.2 509,712 + +1.3 509,733 + +0.3 509,812 + Atu5518 0.11 -0.2 509,815 + Atu5518 0.12 -3.0 509,815 + Atu5518 0.12 +2.0 509,823 - Atu5518 0.12 -0.4 509,854 + Atu5518 0.14 +0.9 509,870 + Atu5518 0.15 -0.9 509,939 - Atu5518 0.20 +0.2 510,004 - Atu5518 0.24 +0.9 510,011 + Atu5518 0.25 +0.0 510,037 - Atu5518 0.26 +0.2 510,159 - Atu5518 0.34 -0.5 510,193 + Atu5518 0.37 -0.2 510,206 - Atu5518 0.38 -1.4 510,233 + Atu5518 0.39 +0.0 510,277 - Atu5518 0.42 -0.4 510,277 - Atu5518 0.42 -1.3 510,319 + Atu5518 0.45 +0.1 510,319 + Atu5518 0.45 +0.1 510,369 + Atu5518 0.48 +0.5 510,379 - Atu5518 0.49 -0.1 510,410 - Atu5518 0.51 +1.9 510,418 + Atu5518 0.52 -0.5 510,426 - Atu5518 0.52 +1.1 510,426 - Atu5518 0.52 -0.8 510,442 - Atu5518 0.53 +0.5 510,451 + Atu5518 0.54 +2.0 510,456 + Atu5518 0.54 -0.7 510,474 - Atu5518 0.55 -3.8 510,553 + Atu5518 0.61 +0.0
Or see this region's nucleotide sequence