Strain Fitness in Agrobacterium fabrum C58 around Atu5023

Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5022 and Atu5023 are separated by 301 nucleotidesAtu5023 and Atu5024 are separated by 29 nucleotides Atu5022: Atu5022 - hypothetical protein, at 22,228 to 24,126 Atu5022 Atu5023: Atu5023 - hypothetical protein, at 24,428 to 26,161 Atu5023 Atu5024: Atu5024 - ATP-dependent DNA helicase, at 26,191 to 27,891 Atu5024 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 23.462 kb on - strand, within Atu5022at 23.463 kb on + strand, within Atu5022at 23.488 kb on + strand, within Atu5022at 23.488 kb on + strand, within Atu5022at 23.506 kb on - strand, within Atu5022at 23.520 kb on + strand, within Atu5022at 23.564 kb on + strand, within Atu5022at 23.564 kb on + strand, within Atu5022at 23.569 kb on + strand, within Atu5022at 23.574 kb on + strand, within Atu5022at 23.575 kb on + strand, within Atu5022at 23.583 kb on - strand, within Atu5022at 23.624 kb on + strand, within Atu5022at 23.627 kb on - strand, within Atu5022at 23.633 kb on + strand, within Atu5022at 23.678 kb on + strand, within Atu5022at 23.678 kb on + strand, within Atu5022at 23.678 kb on + strand, within Atu5022at 23.782 kb on - strand, within Atu5022at 23.848 kb on - strand, within Atu5022at 23.855 kb on + strand, within Atu5022at 23.863 kb on - strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.884 kb on - strand, within Atu5022at 23.888 kb on + strand, within Atu5022at 23.888 kb on + strand, within Atu5022at 23.896 kb on - strand, within Atu5022at 23.905 kb on + strand, within Atu5022at 23.933 kb on - strand, within Atu5022at 23.966 kb on + strandat 24.012 kb on - strandat 24.025 kb on + strandat 24.025 kb on + strandat 24.041 kb on - strandat 24.047 kb on + strandat 24.107 kb on + strandat 24.115 kb on - strandat 24.115 kb on - strandat 24.339 kb on + strandat 24.397 kb on + strandat 24.433 kb on + strandat 24.487 kb on + strandat 24.506 kb on - strandat 24.577 kb on + strandat 24.581 kb on - strandat 24.583 kb on + strandat 24.587 kb on + strandat 24.603 kb on - strand, within Atu5023at 24.624 kb on + strand, within Atu5023at 24.702 kb on + strand, within Atu5023at 24.703 kb on - strand, within Atu5023at 24.733 kb on + strand, within Atu5023at 24.743 kb on + strand, within Atu5023at 24.779 kb on + strand, within Atu5023at 24.801 kb on + strand, within Atu5023at 24.809 kb on - strand, within Atu5023at 24.829 kb on + strand, within Atu5023at 24.850 kb on + strand, within Atu5023at 24.858 kb on - strand, within Atu5023at 24.890 kb on - strand, within Atu5023at 24.894 kb on + strand, within Atu5023at 24.894 kb on + strand, within Atu5023at 24.894 kb on + strand, within Atu5023at 24.902 kb on - strand, within Atu5023at 24.902 kb on - strand, within Atu5023at 24.948 kb on - strand, within Atu5023at 25.000 kb on + strand, within Atu5023at 25.040 kb on + strand, within Atu5023at 25.056 kb on + strand, within Atu5023at 25.064 kb on - strand, within Atu5023at 25.064 kb on - strand, within Atu5023at 25.142 kb on + strand, within Atu5023at 25.176 kb on + strand, within Atu5023at 25.176 kb on + strand, within Atu5023at 25.181 kb on + strand, within Atu5023at 25.252 kb on - strand, within Atu5023at 25.270 kb on + strand, within Atu5023at 25.275 kb on + strand, within Atu5023at 25.278 kb on - strand, within Atu5023at 25.278 kb on - strand, within Atu5023at 25.280 kb on + strand, within Atu5023at 25.280 kb on + strand, within Atu5023at 25.280 kb on + strand, within Atu5023at 25.282 kb on + strand, within Atu5023at 25.282 kb on + strand, within Atu5023at 25.288 kb on - strand, within Atu5023at 25.288 kb on - strand, within Atu5023at 25.288 kb on - strand, within Atu5023at 25.290 kb on - strand, within Atu5023at 25.433 kb on + strand, within Atu5023at 25.446 kb on - strand, within Atu5023at 25.453 kb on + strand, within Atu5023at 25.483 kb on + strand, within Atu5023at 25.483 kb on + strand, within Atu5023at 25.483 kb on + strand, within Atu5023at 25.491 kb on - strand, within Atu5023at 25.492 kb on + strand, within Atu5023at 25.519 kb on + strand, within Atu5023at 25.529 kb on + strand, within Atu5023at 25.529 kb on + strand, within Atu5023at 25.537 kb on - strand, within Atu5023at 25.564 kb on + strand, within Atu5023at 25.564 kb on + strand, within Atu5023at 25.564 kb on + strand, within Atu5023at 25.572 kb on - strand, within Atu5023at 25.585 kb on + strand, within Atu5023at 25.606 kb on + strand, within Atu5023at 25.610 kb on + strand, within Atu5023at 25.611 kb on + strand, within Atu5023at 25.619 kb on - strand, within Atu5023at 25.637 kb on + strand, within Atu5023at 25.637 kb on + strand, within Atu5023at 25.640 kb on - strand, within Atu5023at 25.645 kb on - strand, within Atu5023at 25.647 kb on + strand, within Atu5023at 25.650 kb on - strand, within Atu5023at 25.655 kb on - strand, within Atu5023at 25.663 kb on - strand, within Atu5023at 25.767 kb on - strand, within Atu5023at 25.911 kb on + strand, within Atu5023at 25.913 kb on - strand, within Atu5023at 25.934 kb on - strand, within Atu5023at 26.044 kb on - strandat 26.044 kb on - strandat 26.074 kb on - strandat 26.086 kb on + strandat 26.094 kb on - strandat 26.135 kb on + strandat 26.143 kb on - strandat 26.169 kb on + strandat 26.211 kb on - strandat 26.390 kb on + strand, within Atu5024at 26.417 kb on - strand, within Atu5024at 26.427 kb on - strand, within Atu5024at 26.433 kb on + strand, within Atu5024at 26.533 kb on + strand, within Atu5024at 26.541 kb on - strand, within Atu5024at 26.541 kb on - strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.551 kb on - strand, within Atu5024at 26.614 kb on - strand, within Atu5024at 26.667 kb on + strand, within Atu5024at 26.706 kb on + strand, within Atu5024at 26.706 kb on + strand, within Atu5024at 26.714 kb on - strand, within Atu5024at 26.714 kb on - strand, within Atu5024at 26.714 kb on - strand, within Atu5024at 26.737 kb on + strand, within Atu5024at 26.746 kb on - strand, within Atu5024at 26.758 kb on - strand, within Atu5024at 26.771 kb on + strand, within Atu5024at 26.771 kb on + strand, within Atu5024at 26.771 kb on + strand, within Atu5024at 26.779 kb on - strand, within Atu5024at 26.791 kb on + strand, within Atu5024at 26.810 kb on + strand, within Atu5024at 26.871 kb on + strand, within Atu5024at 26.880 kb on + strand, within Atu5024at 26.944 kb on - strand, within Atu5024at 27.042 kb on - strand, within Atu5024at 27.044 kb on + strand, within Atu5024at 27.044 kb on + strand, within Atu5024at 27.054 kb on + strand, within Atu5024at 27.062 kb on - strand, within Atu5024at 27.062 kb on - strand, within Atu5024at 27.158 kb on - strand, within Atu5024

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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23,462 - Atu5022 0.65 -2.5
23,463 + Atu5022 0.65 -2.0
23,488 + Atu5022 0.66 +0.8
23,488 + Atu5022 0.66 +0.6
23,506 - Atu5022 0.67 +0.0
23,520 + Atu5022 0.68 +0.3
23,564 + Atu5022 0.70 +0.5
23,564 + Atu5022 0.70 +0.3
23,569 + Atu5022 0.71 -1.1
23,574 + Atu5022 0.71 -0.2
23,575 + Atu5022 0.71 +0.6
23,583 - Atu5022 0.71 -0.2
23,624 + Atu5022 0.74 -0.2
23,627 - Atu5022 0.74 -0.9
23,633 + Atu5022 0.74 -1.1
23,678 + Atu5022 0.76 -3.4
23,678 + Atu5022 0.76 +0.3
23,678 + Atu5022 0.76 +1.4
23,782 - Atu5022 0.82 -2.0
23,848 - Atu5022 0.85 +0.4
23,855 + Atu5022 0.86 +2.4
23,863 - Atu5022 0.86 -0.6
23,866 + Atu5022 0.86 +0.5
23,866 + Atu5022 0.86 -0.1
23,866 + Atu5022 0.86 -3.9
23,866 + Atu5022 0.86 +0.1
23,866 + Atu5022 0.86 +1.4
23,874 - Atu5022 0.87 -0.2
23,874 - Atu5022 0.87 -0.3
23,874 - Atu5022 0.87 -1.1
23,874 - Atu5022 0.87 -0.3
23,884 - Atu5022 0.87 +0.9
23,888 + Atu5022 0.87 -0.1
23,888 + Atu5022 0.87 +1.1
23,896 - Atu5022 0.88 +0.0
23,905 + Atu5022 0.88 -1.9
23,933 - Atu5022 0.90 -1.9
23,966 + +0.3
24,012 - +0.5
24,025 + -0.5
24,025 + -0.1
24,041 - -2.1
24,047 + +0.5
24,107 + +0.9
24,115 - -0.4
24,115 - +0.4
24,339 + -0.5
24,397 + +0.9
24,433 + +0.2
24,487 + +1.5
24,506 - +0.9
24,577 + +0.3
24,581 - +1.0
24,583 + -1.0
24,587 + +0.5
24,603 - Atu5023 0.10 -0.7
24,624 + Atu5023 0.11 -2.0
24,702 + Atu5023 0.16 +0.7
24,703 - Atu5023 0.16 +0.4
24,733 + Atu5023 0.18 +0.2
24,743 + Atu5023 0.18 +0.3
24,779 + Atu5023 0.20 +4.1
24,801 + Atu5023 0.22 +0.7
24,809 - Atu5023 0.22 -2.1
24,829 + Atu5023 0.23 +0.5
24,850 + Atu5023 0.24 -0.2
24,858 - Atu5023 0.25 -2.1
24,890 - Atu5023 0.27 -0.2
24,894 + Atu5023 0.27 +0.5
24,894 + Atu5023 0.27 -0.2
24,894 + Atu5023 0.27 -0.1
24,902 - Atu5023 0.27 -0.3
24,902 - Atu5023 0.27 +0.0
24,948 - Atu5023 0.30 -0.6
25,000 + Atu5023 0.33 -3.4
25,040 + Atu5023 0.35 -0.1
25,056 + Atu5023 0.36 -0.3
25,064 - Atu5023 0.37 -0.1
25,064 - Atu5023 0.37 -2.0
25,142 + Atu5023 0.41 +2.5
25,176 + Atu5023 0.43 +0.6
25,176 + Atu5023 0.43 +0.5
25,181 + Atu5023 0.43 -0.0
25,252 - Atu5023 0.48 -1.5
25,270 + Atu5023 0.49 -1.8
25,275 + Atu5023 0.49 -0.0
25,278 - Atu5023 0.49 +0.2
25,278 - Atu5023 0.49 -0.8
25,280 + Atu5023 0.49 +0.4
25,280 + Atu5023 0.49 +0.5
25,280 + Atu5023 0.49 +0.9
25,282 + Atu5023 0.49 +0.3
25,282 + Atu5023 0.49 -2.5
25,288 - Atu5023 0.50 +1.5
25,288 - Atu5023 0.50 +0.1
25,288 - Atu5023 0.50 +1.0
25,290 - Atu5023 0.50 +1.1
25,433 + Atu5023 0.58 +1.1
25,446 - Atu5023 0.59 -0.4
25,453 + Atu5023 0.59 +1.0
25,483 + Atu5023 0.61 +0.2
25,483 + Atu5023 0.61 -0.5
25,483 + Atu5023 0.61 +0.4
25,491 - Atu5023 0.61 -2.3
25,492 + Atu5023 0.61 -1.1
25,519 + Atu5023 0.63 +2.1
25,529 + Atu5023 0.63 +0.1
25,529 + Atu5023 0.63 +1.2
25,537 - Atu5023 0.64 -0.5
25,564 + Atu5023 0.66 -1.9
25,564 + Atu5023 0.66 +1.2
25,564 + Atu5023 0.66 +0.4
25,572 - Atu5023 0.66 -1.1
25,585 + Atu5023 0.67 +1.6
25,606 + Atu5023 0.68 -1.0
25,610 + Atu5023 0.68 +0.5
25,611 + Atu5023 0.68 -0.4
25,619 - Atu5023 0.69 -0.6
25,637 + Atu5023 0.70 -0.1
25,637 + Atu5023 0.70 -1.5
25,640 - Atu5023 0.70 -1.6
25,645 - Atu5023 0.70 +0.2
25,647 + Atu5023 0.70 +0.0
25,650 - Atu5023 0.70 +0.9
25,655 - Atu5023 0.71 +0.5
25,663 - Atu5023 0.71 -1.7
25,767 - Atu5023 0.77 +0.2
25,911 + Atu5023 0.86 +0.0
25,913 - Atu5023 0.86 +0.3
25,934 - Atu5023 0.87 -0.5
26,044 - -0.8
26,044 - +1.1
26,074 - -1.3
26,086 + +0.9
26,094 - +0.6
26,135 + -0.3
26,143 - +0.0
26,169 + -0.4
26,211 - -0.1
26,390 + Atu5024 0.12 -0.8
26,417 - Atu5024 0.13 -0.1
26,427 - Atu5024 0.14 -0.5
26,433 + Atu5024 0.14 +1.4
26,533 + Atu5024 0.20 +0.6
26,541 - Atu5024 0.21 +0.0
26,541 - Atu5024 0.21 -1.5
26,543 + Atu5024 0.21 +0.6
26,543 + Atu5024 0.21 -0.2
26,543 + Atu5024 0.21 +0.5
26,543 + Atu5024 0.21 -2.2
26,551 - Atu5024 0.21 +0.3
26,614 - Atu5024 0.25 +0.4
26,667 + Atu5024 0.28 -0.6
26,706 + Atu5024 0.30 +2.5
26,706 + Atu5024 0.30 +0.6
26,714 - Atu5024 0.31 +1.5
26,714 - Atu5024 0.31 -1.1
26,714 - Atu5024 0.31 +3.6
26,737 + Atu5024 0.32 -2.3
26,746 - Atu5024 0.33 +0.5
26,758 - Atu5024 0.33 -0.2
26,771 + Atu5024 0.34 +0.4
26,771 + Atu5024 0.34 -1.5
26,771 + Atu5024 0.34 +0.2
26,779 - Atu5024 0.35 -0.6
26,791 + Atu5024 0.35 -1.1
26,810 + Atu5024 0.36 -1.8
26,871 + Atu5024 0.40 -0.4
26,880 + Atu5024 0.41 -0.1
26,944 - Atu5024 0.44 -0.4
27,042 - Atu5024 0.50 +1.1
27,044 + Atu5024 0.50 +0.5
27,044 + Atu5024 0.50 +0.4
27,054 + Atu5024 0.51 -0.2
27,062 - Atu5024 0.51 +0.6
27,062 - Atu5024 0.51 +1.4
27,158 - Atu5024 0.57 +0.2

Or see this region's nucleotide sequence