Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3557 and Atu3558 are separated by 16 nucleotides Atu3558 and Atu3559 are separated by 54 nucleotides
Atu3557: Atu3557 - hypothetical protein, at 609,950 to 611,419
Atu3557
Atu3558: Atu3558 - glycosyltransferase, at 611,436 to 612,650
Atu3558
Atu3559: Atu3559 - glycosyltransferase, at 612,705 to 613,799
Atu3559
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.504 kb on - strand, within Atu3557 at 610.527 kb on - strand, within Atu3557 at 610.530 kb on - strand, within Atu3557 at 610.538 kb on - strand, within Atu3557 at 610.545 kb on + strand, within Atu3557 at 610.554 kb on + strand, within Atu3557 at 610.562 kb on - strand, within Atu3557 at 610.564 kb on + strand, within Atu3557 at 610.584 kb on - strand, within Atu3557 at 610.609 kb on + strand, within Atu3557 at 610.856 kb on - strand, within Atu3557 at 610.892 kb on - strand, within Atu3557 at 611.018 kb on - strand, within Atu3557 at 611.018 kb on - strand, within Atu3557 at 611.089 kb on + strand, within Atu3557 at 611.145 kb on + strand, within Atu3557 at 611.345 kb on - strand at 611.345 kb on - strand at 611.470 kb on - strand at 611.515 kb on - strand at 611.531 kb on + strand at 611.575 kb on + strand, within Atu3558 at 611.613 kb on + strand, within Atu3558 at 611.753 kb on + strand, within Atu3558 at 611.895 kb on + strand, within Atu3558 at 612.076 kb on + strand, within Atu3558 at 612.083 kb on + strand, within Atu3558 at 612.083 kb on + strand, within Atu3558 at 612.084 kb on - strand, within Atu3558 at 612.125 kb on + strand, within Atu3558 at 612.216 kb on - strand, within Atu3558 at 612.218 kb on + strand, within Atu3558 at 612.293 kb on + strand, within Atu3558 at 612.479 kb on + strand, within Atu3558 at 612.517 kb on - strand, within Atu3558 at 612.617 kb on + strand at 612.627 kb on - strand at 612.627 kb on - strand at 612.627 kb on - strand at 612.644 kb on + strand at 612.652 kb on - strand at 612.664 kb on - strand at 612.669 kb on - strand at 612.728 kb on + strand at 612.735 kb on + strand at 612.979 kb on - strand, within Atu3559 at 612.995 kb on + strand, within Atu3559 at 613.008 kb on + strand, within Atu3559 at 613.129 kb on + strand, within Atu3559 at 613.131 kb on + strand, within Atu3559 at 613.137 kb on - strand, within Atu3559 at 613.227 kb on - strand, within Atu3559 at 613.363 kb on + strand, within Atu3559 at 613.384 kb on + strand, within Atu3559 at 613.439 kb on + strand, within Atu3559 at 613.469 kb on + strand, within Atu3559 at 613.519 kb on + strand, within Atu3559 at 613.527 kb on - strand, within Atu3559 at 613.544 kb on + strand, within Atu3559 at 613.565 kb on + strand, within Atu3559
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 610,504 - Atu3557 0.38 +0.3 610,527 - Atu3557 0.39 -1.2 610,530 - Atu3557 0.39 -2.7 610,538 - Atu3557 0.40 -1.0 610,545 + Atu3557 0.40 -0.4 610,554 + Atu3557 0.41 -0.1 610,562 - Atu3557 0.42 -2.0 610,564 + Atu3557 0.42 -0.4 610,584 - Atu3557 0.43 -1.3 610,609 + Atu3557 0.45 -0.8 610,856 - Atu3557 0.62 -1.8 610,892 - Atu3557 0.64 +0.3 611,018 - Atu3557 0.73 +0.3 611,018 - Atu3557 0.73 -2.7 611,089 + Atu3557 0.77 -1.8 611,145 + Atu3557 0.81 +0.1 611,345 - -1.2 611,345 - +0.9 611,470 - +0.8 611,515 - +0.3 611,531 + +1.9 611,575 + Atu3558 0.11 -2.3 611,613 + Atu3558 0.15 -1.7 611,753 + Atu3558 0.26 -0.1 611,895 + Atu3558 0.38 -0.0 612,076 + Atu3558 0.53 +1.2 612,083 + Atu3558 0.53 -0.2 612,083 + Atu3558 0.53 +0.7 612,084 - Atu3558 0.53 +0.9 612,125 + Atu3558 0.57 +0.9 612,216 - Atu3558 0.64 +0.3 612,218 + Atu3558 0.64 +1.2 612,293 + Atu3558 0.71 -0.5 612,479 + Atu3558 0.86 -0.2 612,517 - Atu3558 0.89 +0.3 612,617 + +1.0 612,627 - +1.2 612,627 - -0.4 612,627 - +0.6 612,644 + +0.2 612,652 - -0.9 612,664 - +0.4 612,669 - +1.1 612,728 + -0.4 612,735 + -0.6 612,979 - Atu3559 0.25 -0.1 612,995 + Atu3559 0.26 -0.5 613,008 + Atu3559 0.28 -1.3 613,129 + Atu3559 0.39 -1.0 613,131 + Atu3559 0.39 -2.1 613,137 - Atu3559 0.39 -2.6 613,227 - Atu3559 0.48 -0.7 613,363 + Atu3559 0.60 -0.8 613,384 + Atu3559 0.62 +0.9 613,439 + Atu3559 0.67 +2.2 613,469 + Atu3559 0.70 -0.0 613,519 + Atu3559 0.74 -3.2 613,527 - Atu3559 0.75 -0.4 613,544 + Atu3559 0.77 -0.9 613,565 + Atu3559 0.79 -0.6
Or see this region's nucleotide sequence