Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3488 and Atu3489 are separated by 14 nucleotides Atu3489 and Atu3490 overlap by 4 nucleotides
Atu3488: Atu3488 - ABC transporter permease, at 538,644 to 540,176
Atu3488
Atu3489: Atu3489 - ABC transporter permease, at 540,191 to 541,192
Atu3489
Atu3490: Atu3490 - ABC transporter permease, at 541,189 to 542,199
Atu3490
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1 at 539.258 kb on + strand, within Atu3488 at 539.298 kb on - strand, within Atu3488 at 539.615 kb on + strand, within Atu3488 at 539.694 kb on - strand, within Atu3488 at 539.769 kb on - strand, within Atu3488 at 539.786 kb on - strand, within Atu3488 at 539.996 kb on - strand, within Atu3488 at 540.095 kb on - strand at 540.255 kb on + strand at 540.275 kb on + strand at 540.276 kb on + strand at 540.430 kb on - strand, within Atu3489 at 540.447 kb on + strand, within Atu3489 at 540.602 kb on + strand, within Atu3489 at 540.638 kb on + strand, within Atu3489 at 540.649 kb on - strand, within Atu3489 at 540.685 kb on + strand, within Atu3489 at 540.718 kb on - strand, within Atu3489 at 540.732 kb on + strand, within Atu3489 at 540.733 kb on - strand, within Atu3489 at 540.763 kb on - strand, within Atu3489 at 541.011 kb on + strand, within Atu3489 at 541.020 kb on - strand, within Atu3489 at 541.137 kb on + strand at 541.164 kb on - strand at 541.169 kb on - strand at 541.264 kb on - strand at 541.377 kb on - strand, within Atu3490 at 541.377 kb on - strand, within Atu3490 at 541.377 kb on - strand, within Atu3490 at 541.422 kb on - strand, within Atu3490 at 541.422 kb on - strand, within Atu3490 at 541.462 kb on + strand, within Atu3490 at 541.492 kb on + strand, within Atu3490 at 541.500 kb on - strand, within Atu3490 at 541.500 kb on - strand, within Atu3490 at 541.505 kb on - strand, within Atu3490 at 541.511 kb on + strand, within Atu3490 at 541.516 kb on + strand, within Atu3490 at 541.519 kb on - strand, within Atu3490 at 541.519 kb on - strand, within Atu3490 at 541.603 kb on + strand, within Atu3490 at 541.619 kb on + strand, within Atu3490 at 541.647 kb on - strand, within Atu3490 at 541.715 kb on - strand, within Atu3490 at 541.715 kb on - strand, within Atu3490 at 541.806 kb on + strand, within Atu3490 at 541.813 kb on - strand, within Atu3490 at 541.814 kb on - strand, within Atu3490 at 541.814 kb on - strand, within Atu3490 at 541.902 kb on - strand, within Atu3490 at 542.150 kb on - strand at 542.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 539,258 + Atu3488 0.40 -0.3 539,298 - Atu3488 0.43 -1.4 539,615 + Atu3488 0.63 +0.3 539,694 - Atu3488 0.68 +0.9 539,769 - Atu3488 0.73 +0.8 539,786 - Atu3488 0.74 +0.7 539,996 - Atu3488 0.88 +1.5 540,095 - +0.2 540,255 + -1.7 540,275 + -1.4 540,276 + +0.2 540,430 - Atu3489 0.24 -0.7 540,447 + Atu3489 0.26 -1.2 540,602 + Atu3489 0.41 +0.7 540,638 + Atu3489 0.45 -0.1 540,649 - Atu3489 0.46 -0.4 540,685 + Atu3489 0.49 -0.3 540,718 - Atu3489 0.53 -0.8 540,732 + Atu3489 0.54 -0.4 540,733 - Atu3489 0.54 -0.2 540,763 - Atu3489 0.57 +1.3 541,011 + Atu3489 0.82 -0.3 541,020 - Atu3489 0.83 -0.8 541,137 + -0.4 541,164 - -0.2 541,169 - -0.0 541,264 - +0.6 541,377 - Atu3490 0.19 -0.1 541,377 - Atu3490 0.19 +0.8 541,377 - Atu3490 0.19 +0.9 541,422 - Atu3490 0.23 +0.1 541,422 - Atu3490 0.23 +0.1 541,462 + Atu3490 0.27 +0.7 541,492 + Atu3490 0.30 +0.3 541,500 - Atu3490 0.31 +0.3 541,500 - Atu3490 0.31 -2.6 541,505 - Atu3490 0.31 -1.0 541,511 + Atu3490 0.32 +0.7 541,516 + Atu3490 0.32 -0.6 541,519 - Atu3490 0.33 +0.3 541,519 - Atu3490 0.33 -2.0 541,603 + Atu3490 0.41 +0.3 541,619 + Atu3490 0.43 +0.5 541,647 - Atu3490 0.45 -0.9 541,715 - Atu3490 0.52 -0.5 541,715 - Atu3490 0.52 -1.0 541,806 + Atu3490 0.61 -1.2 541,813 - Atu3490 0.62 +0.2 541,814 - Atu3490 0.62 +0.4 541,814 - Atu3490 0.62 -0.4 541,902 - Atu3490 0.71 -0.7 542,150 - -0.5 542,184 + +0.8
Or see this region's nucleotide sequence