Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3432 and Atu3433 are separated by 69 nucleotides Atu3433 and Atu3434 are separated by 269 nucleotides
Atu3432: Atu3432 - desulfurizing enzyme, at 477,777 to 478,808
Atu3432
Atu3433: Atu3433 - oligopeptide ABC transporter substrate-binding protein, at 478,878 to 480,485
Atu3433
Atu3434: Atu3434 - oligopeptide ABC transporter permease, at 480,755 to 481,744
Atu3434
Position (kb) 478
479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 477.920 kb on + strand, within Atu3432 at 478.085 kb on + strand, within Atu3432 at 478.191 kb on - strand, within Atu3432 at 478.246 kb on + strand, within Atu3432 at 478.279 kb on - strand, within Atu3432 at 478.352 kb on - strand, within Atu3432 at 478.373 kb on + strand, within Atu3432 at 478.381 kb on - strand, within Atu3432 at 478.463 kb on - strand, within Atu3432 at 478.517 kb on + strand, within Atu3432 at 478.555 kb on - strand, within Atu3432 at 478.660 kb on + strand, within Atu3432 at 478.717 kb on - strand at 478.734 kb on + strand at 478.764 kb on - strand at 478.796 kb on + strand at 478.806 kb on + strand at 478.818 kb on - strand at 478.968 kb on + strand at 479.055 kb on - strand, within Atu3433 at 479.077 kb on + strand, within Atu3433 at 479.085 kb on - strand, within Atu3433 at 479.106 kb on + strand, within Atu3433 at 479.111 kb on + strand, within Atu3433 at 479.293 kb on - strand, within Atu3433 at 479.316 kb on + strand, within Atu3433 at 479.321 kb on + strand, within Atu3433 at 479.321 kb on + strand, within Atu3433 at 479.435 kb on + strand, within Atu3433 at 479.435 kb on + strand, within Atu3433 at 479.475 kb on - strand, within Atu3433 at 479.593 kb on + strand, within Atu3433 at 479.694 kb on - strand, within Atu3433 at 479.713 kb on - strand, within Atu3433 at 479.825 kb on + strand, within Atu3433 at 479.881 kb on - strand, within Atu3433 at 479.887 kb on - strand, within Atu3433 at 479.902 kb on - strand, within Atu3433 at 479.909 kb on - strand, within Atu3433 at 479.917 kb on - strand, within Atu3433 at 480.013 kb on + strand, within Atu3433 at 480.069 kb on + strand, within Atu3433 at 480.141 kb on + strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.164 kb on + strand, within Atu3433 at 480.174 kb on + strand, within Atu3433 at 480.190 kb on + strand, within Atu3433 at 480.190 kb on + strand, within Atu3433 at 480.198 kb on - strand, within Atu3433 at 480.277 kb on + strand, within Atu3433 at 480.306 kb on + strand, within Atu3433 at 480.325 kb on + strand at 480.344 kb on + strand at 480.990 kb on + strand, within Atu3434 at 481.046 kb on - strand, within Atu3434 at 481.089 kb on - strand, within Atu3434 at 481.131 kb on - strand, within Atu3434 at 481.200 kb on - strand, within Atu3434 at 481.228 kb on - strand, within Atu3434 at 481.281 kb on + strand, within Atu3434 at 481.296 kb on + strand, within Atu3434 at 481.343 kb on - strand, within Atu3434 at 481.388 kb on + strand, within Atu3434 at 481.396 kb on - strand, within Atu3434 at 481.482 kb on + strand, within Atu3434
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 477,920 + Atu3432 0.14 +0.8 478,085 + Atu3432 0.30 +0.7 478,191 - Atu3432 0.40 +1.5 478,246 + Atu3432 0.45 +1.0 478,279 - Atu3432 0.49 +0.7 478,352 - Atu3432 0.56 +0.1 478,373 + Atu3432 0.58 -1.8 478,381 - Atu3432 0.59 -0.2 478,463 - Atu3432 0.66 -1.4 478,517 + Atu3432 0.72 +0.7 478,555 - Atu3432 0.75 -1.1 478,660 + Atu3432 0.86 +1.0 478,717 - +0.1 478,734 + +0.6 478,764 - -0.3 478,796 + +0.2 478,806 + +1.6 478,818 - -0.5 478,968 + -0.7 479,055 - Atu3433 0.11 +3.9 479,077 + Atu3433 0.12 -2.1 479,085 - Atu3433 0.13 -0.2 479,106 + Atu3433 0.14 +0.0 479,111 + Atu3433 0.14 -3.3 479,293 - Atu3433 0.26 +0.3 479,316 + Atu3433 0.27 -0.2 479,321 + Atu3433 0.28 +0.9 479,321 + Atu3433 0.28 -0.2 479,435 + Atu3433 0.35 -0.5 479,435 + Atu3433 0.35 +0.7 479,475 - Atu3433 0.37 +1.0 479,593 + Atu3433 0.44 -1.6 479,694 - Atu3433 0.51 -0.8 479,713 - Atu3433 0.52 +1.0 479,825 + Atu3433 0.59 +1.1 479,881 - Atu3433 0.62 +0.3 479,887 - Atu3433 0.63 +2.9 479,902 - Atu3433 0.64 +0.6 479,909 - Atu3433 0.64 +1.7 479,917 - Atu3433 0.65 +0.5 480,013 + Atu3433 0.71 +0.7 480,069 + Atu3433 0.74 +1.7 480,141 + Atu3433 0.79 +1.7 480,149 - Atu3433 0.79 -0.7 480,149 - Atu3433 0.79 -2.6 480,149 - Atu3433 0.79 -0.8 480,164 + Atu3433 0.80 -0.4 480,174 + Atu3433 0.81 -0.8 480,190 + Atu3433 0.82 +0.9 480,190 + Atu3433 0.82 +0.4 480,198 - Atu3433 0.82 -0.5 480,277 + Atu3433 0.87 -1.8 480,306 + Atu3433 0.89 -0.3 480,325 + +0.0 480,344 + +0.6 480,990 + Atu3434 0.24 +0.9 481,046 - Atu3434 0.29 -2.1 481,089 - Atu3434 0.34 +0.2 481,131 - Atu3434 0.38 -0.9 481,200 - Atu3434 0.45 +2.6 481,228 - Atu3434 0.48 +0.2 481,281 + Atu3434 0.53 +1.2 481,296 + Atu3434 0.55 +1.1 481,343 - Atu3434 0.59 -0.3 481,388 + Atu3434 0.64 -1.1 481,396 - Atu3434 0.65 -0.5 481,482 + Atu3434 0.73 +0.5
Or see this region's nucleotide sequence