Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3244 and Atu3245 are separated by 30 nucleotides Atu3245 and Atu3246 are separated by 71 nucleotides Atu3246 and Atu3247 are separated by 42 nucleotides Atu3247 and Atu3248 overlap by 4 nucleotides
Atu3244: Atu3244 - diguanylate cyclase, at 261,692 to 264,010
Atu3244
Atu3245: Atu3245 - amino acid ABC transporter substrate-binding protein, at 264,041 to 264,934
Atu3245
Atu3246: Atu3246 - amino acid ABC transporter substrate-binding protein, at 265,006 to 265,908
Atu3246
Atu3247: Atu3247 - cell division topological specificity factor MinE, at 265,951 to 266,211
Atu3247
Atu3248: Atu3248 - cell division inhibitor, at 266,208 to 267,023
Atu3248
Position (kb) 265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.084 kb on + strand at 264.235 kb on - strand, within Atu3245 at 264.265 kb on + strand, within Atu3245 at 264.288 kb on - strand, within Atu3245 at 264.301 kb on + strand, within Atu3245 at 264.303 kb on - strand, within Atu3245 at 264.368 kb on + strand, within Atu3245 at 264.532 kb on - strand, within Atu3245 at 264.553 kb on + strand, within Atu3245 at 264.564 kb on + strand, within Atu3245 at 264.661 kb on + strand, within Atu3245 at 264.678 kb on + strand, within Atu3245 at 264.687 kb on + strand, within Atu3245 at 264.699 kb on + strand, within Atu3245 at 264.766 kb on - strand, within Atu3245 at 264.777 kb on + strand, within Atu3245 at 264.781 kb on - strand, within Atu3245 at 264.794 kb on + strand, within Atu3245 at 264.802 kb on - strand, within Atu3245 at 264.802 kb on - strand, within Atu3245 at 264.885 kb on - strand at 264.891 kb on + strand at 264.891 kb on + strand at 264.891 kb on + strand at 265.077 kb on + strand at 265.172 kb on + strand, within Atu3246 at 265.180 kb on - strand, within Atu3246 at 265.180 kb on - strand, within Atu3246 at 265.199 kb on + strand, within Atu3246 at 265.265 kb on - strand, within Atu3246 at 265.346 kb on - strand, within Atu3246 at 265.356 kb on + strand, within Atu3246 at 265.434 kb on - strand, within Atu3246 at 265.705 kb on - strand, within Atu3246 at 265.719 kb on + strand, within Atu3246 at 265.832 kb on + strand at 265.883 kb on + strand at 265.883 kb on + strand at 265.917 kb on + strand at 265.948 kb on + strand at 265.956 kb on - strand at 265.956 kb on - strand at 266.258 kb on - strand at 266.313 kb on + strand, within Atu3248 at 266.378 kb on + strand, within Atu3248 at 266.396 kb on + strand, within Atu3248 at 266.406 kb on + strand, within Atu3248 at 266.409 kb on - strand, within Atu3248 at 266.577 kb on - strand, within Atu3248 at 266.587 kb on - strand, within Atu3248 at 266.636 kb on + strand, within Atu3248 at 266.682 kb on + strand, within Atu3248 at 266.740 kb on + strand, within Atu3248 at 266.834 kb on - strand, within Atu3248 at 266.847 kb on + strand, within Atu3248 at 266.872 kb on - strand, within Atu3248 at 266.880 kb on - strand, within Atu3248
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 264,084 + +0.7 264,235 - Atu3245 0.22 -0.9 264,265 + Atu3245 0.25 -0.3 264,288 - Atu3245 0.28 -0.3 264,301 + Atu3245 0.29 +0.3 264,303 - Atu3245 0.29 -1.0 264,368 + Atu3245 0.37 +1.2 264,532 - Atu3245 0.55 -0.4 264,553 + Atu3245 0.57 -0.2 264,564 + Atu3245 0.59 -1.2 264,661 + Atu3245 0.69 -0.2 264,678 + Atu3245 0.71 +0.3 264,687 + Atu3245 0.72 -1.2 264,699 + Atu3245 0.74 +0.1 264,766 - Atu3245 0.81 -1.3 264,777 + Atu3245 0.82 +0.3 264,781 - Atu3245 0.83 -0.3 264,794 + Atu3245 0.84 -0.5 264,802 - Atu3245 0.85 -0.7 264,802 - Atu3245 0.85 -2.0 264,885 - +0.6 264,891 + -1.9 264,891 + -0.3 264,891 + -0.5 265,077 + -2.9 265,172 + Atu3246 0.18 -1.1 265,180 - Atu3246 0.19 +0.7 265,180 - Atu3246 0.19 +0.3 265,199 + Atu3246 0.21 +0.7 265,265 - Atu3246 0.29 +0.4 265,346 - Atu3246 0.38 +2.4 265,356 + Atu3246 0.39 -1.5 265,434 - Atu3246 0.47 +0.2 265,705 - Atu3246 0.77 +0.4 265,719 + Atu3246 0.79 +0.7 265,832 + -0.5 265,883 + -0.7 265,883 + +0.6 265,917 + -0.3 265,948 + -0.7 265,956 - +0.3 265,956 - -0.2 266,258 - -3.1 266,313 + Atu3248 0.13 +1.3 266,378 + Atu3248 0.21 -2.2 266,396 + Atu3248 0.23 +0.2 266,406 + Atu3248 0.24 -2.4 266,409 - Atu3248 0.25 -1.4 266,577 - Atu3248 0.45 -1.2 266,587 - Atu3248 0.46 +1.3 266,636 + Atu3248 0.52 -0.2 266,682 + Atu3248 0.58 -1.3 266,740 + Atu3248 0.65 +1.7 266,834 - Atu3248 0.77 -0.7 266,847 + Atu3248 0.78 -1.5 266,872 - Atu3248 0.81 -0.6 266,880 - Atu3248 0.82 -0.4
Or see this region's nucleotide sequence