Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0955 and Atu0956 are separated by 49 nucleotides Atu0956 and Atu0957 are separated by 32 nucleotides Atu0957 and Atu0958 overlap by 29 nucleotides
Atu0955: Atu0955 - hypothetical protein, at 945,062 to 945,382
Atu0955
Atu0956: Atu0956 - phage prohead protease, at 945,432 to 946,004
Atu0956
Atu0957: Atu0957 - phage phi-C31 major capsid gp36-like protein, at 946,037 to 947,305
Atu0957
Atu0958: Atu0958 - hypothetical protein, at 947,277 to 948,131
Atu0958
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.037 kb on - strand at 945.061 kb on - strand at 945.114 kb on + strand, within Atu0955 at 945.234 kb on + strand, within Atu0955 at 945.260 kb on - strand, within Atu0955 at 945.321 kb on + strand, within Atu0955 at 945.329 kb on - strand, within Atu0955 at 945.341 kb on - strand, within Atu0955 at 945.358 kb on + strand at 945.378 kb on + strand at 945.442 kb on + strand at 945.478 kb on + strand at 945.478 kb on + strand at 945.486 kb on - strand at 945.557 kb on + strand, within Atu0956 at 945.682 kb on + strand, within Atu0956 at 945.748 kb on - strand, within Atu0956 at 945.749 kb on + strand, within Atu0956 at 945.959 kb on + strand at 945.988 kb on - strand at 945.988 kb on - strand at 946.046 kb on - strand at 946.048 kb on + strand at 946.048 kb on + strand at 946.084 kb on + strand at 946.084 kb on + strand at 946.084 kb on + strand at 946.092 kb on - strand at 946.092 kb on - strand at 946.092 kb on - strand at 946.116 kb on + strand at 946.138 kb on + strand at 946.488 kb on - strand, within Atu0957 at 946.546 kb on - strand, within Atu0957 at 946.566 kb on + strand, within Atu0957 at 946.620 kb on - strand, within Atu0957 at 946.622 kb on - strand, within Atu0957 at 946.622 kb on - strand, within Atu0957 at 946.657 kb on + strand, within Atu0957 at 946.657 kb on + strand, within Atu0957 at 946.658 kb on - strand, within Atu0957 at 946.665 kb on - strand, within Atu0957 at 946.679 kb on + strand, within Atu0957 at 946.687 kb on - strand, within Atu0957 at 946.690 kb on + strand, within Atu0957 at 946.710 kb on + strand, within Atu0957 at 946.736 kb on - strand, within Atu0957 at 946.798 kb on + strand, within Atu0957 at 946.847 kb on - strand, within Atu0957 at 946.902 kb on + strand, within Atu0957 at 946.934 kb on + strand, within Atu0957 at 946.965 kb on - strand, within Atu0957 at 947.004 kb on + strand, within Atu0957 at 947.012 kb on - strand, within Atu0957 at 947.100 kb on - strand, within Atu0957 at 947.103 kb on + strand, within Atu0957 at 947.103 kb on + strand, within Atu0957 at 947.161 kb on + strand, within Atu0957 at 947.217 kb on + strand at 947.218 kb on - strand at 947.227 kb on + strand at 947.227 kb on + strand at 947.235 kb on - strand at 947.235 kb on - strand at 947.362 kb on - strand at 947.399 kb on + strand, within Atu0958 at 947.407 kb on + strand, within Atu0958 at 947.407 kb on + strand, within Atu0958 at 947.407 kb on + strand, within Atu0958 at 947.407 kb on - strand, within Atu0958 at 947.415 kb on - strand, within Atu0958 at 947.456 kb on + strand, within Atu0958 at 947.456 kb on + strand, within Atu0958 at 947.513 kb on + strand, within Atu0958 at 947.521 kb on - strand, within Atu0958 at 947.532 kb on + strand, within Atu0958 at 947.551 kb on + strand, within Atu0958 at 947.642 kb on - strand, within Atu0958 at 947.682 kb on + strand, within Atu0958 at 947.724 kb on - strand, within Atu0958 at 947.761 kb on - strand, within Atu0958 at 947.826 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.870 kb on + strand, within Atu0958 at 947.873 kb on - strand, within Atu0958 at 947.959 kb on - strand, within Atu0958 at 947.967 kb on - strand, within Atu0958 at 948.022 kb on + strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.056 kb on + strand at 948.064 kb on - strand at 948.066 kb on + strand at 948.074 kb on - strand at 948.089 kb on - strand at 948.124 kb on + strand at 948.137 kb on + strand at 948.139 kb on + strand at 948.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 945,037 - +0.4 945,061 - +0.1 945,114 + Atu0955 0.16 -1.6 945,234 + Atu0955 0.54 -1.3 945,260 - Atu0955 0.62 +1.1 945,321 + Atu0955 0.81 +0.6 945,329 - Atu0955 0.83 +0.2 945,341 - Atu0955 0.87 +0.6 945,358 + +0.1 945,378 + -0.4 945,442 + -0.5 945,478 + -0.8 945,478 + -0.8 945,486 - +1.4 945,557 + Atu0956 0.22 -1.7 945,682 + Atu0956 0.44 -0.4 945,748 - Atu0956 0.55 +1.0 945,749 + Atu0956 0.55 -0.1 945,959 + -0.9 945,988 - +0.1 945,988 - +0.4 946,046 - +1.4 946,048 + +0.5 946,048 + +0.6 946,084 + -0.1 946,084 + +0.5 946,084 + +0.3 946,092 - -0.9 946,092 - +0.0 946,092 - +0.8 946,116 + +0.7 946,138 + +0.5 946,488 - Atu0957 0.36 +0.8 946,546 - Atu0957 0.40 -0.1 946,566 + Atu0957 0.42 +0.3 946,620 - Atu0957 0.46 -1.0 946,622 - Atu0957 0.46 -0.2 946,622 - Atu0957 0.46 -2.6 946,657 + Atu0957 0.49 +2.0 946,657 + Atu0957 0.49 +0.4 946,658 - Atu0957 0.49 -0.0 946,665 - Atu0957 0.49 +1.2 946,679 + Atu0957 0.51 -0.8 946,687 - Atu0957 0.51 -0.5 946,690 + Atu0957 0.51 +0.5 946,710 + Atu0957 0.53 +1.1 946,736 - Atu0957 0.55 -3.3 946,798 + Atu0957 0.60 +0.5 946,847 - Atu0957 0.64 -1.8 946,902 + Atu0957 0.68 +1.1 946,934 + Atu0957 0.71 +0.2 946,965 - Atu0957 0.73 -1.9 947,004 + Atu0957 0.76 +0.7 947,012 - Atu0957 0.77 -0.0 947,100 - Atu0957 0.84 +1.6 947,103 + Atu0957 0.84 +0.9 947,103 + Atu0957 0.84 +0.5 947,161 + Atu0957 0.89 +0.2 947,217 + +0.4 947,218 - +0.8 947,227 + -0.1 947,227 + -3.1 947,235 - -1.7 947,235 - -0.6 947,362 - -2.9 947,399 + Atu0958 0.14 +1.0 947,407 + Atu0958 0.15 +0.4 947,407 + Atu0958 0.15 -1.7 947,407 + Atu0958 0.15 +0.1 947,407 - Atu0958 0.15 +0.2 947,415 - Atu0958 0.16 +0.5 947,456 + Atu0958 0.21 -0.2 947,456 + Atu0958 0.21 -0.1 947,513 + Atu0958 0.28 -2.1 947,521 - Atu0958 0.29 +0.9 947,532 + Atu0958 0.30 +0.2 947,551 + Atu0958 0.32 +1.9 947,642 - Atu0958 0.43 +0.7 947,682 + Atu0958 0.47 -0.0 947,724 - Atu0958 0.52 +0.2 947,761 - Atu0958 0.57 -0.6 947,826 - Atu0958 0.64 +0.4 947,831 - Atu0958 0.65 +1.8 947,831 - Atu0958 0.65 +0.6 947,865 + Atu0958 0.69 -0.2 947,865 + Atu0958 0.69 -1.0 947,870 + Atu0958 0.69 +1.0 947,873 - Atu0958 0.70 +0.1 947,959 - Atu0958 0.80 +0.5 947,967 - Atu0958 0.81 -1.0 948,022 + Atu0958 0.87 -0.8 948,030 - Atu0958 0.88 +0.2 948,030 - Atu0958 0.88 +0.1 948,056 + +0.4 948,064 - -0.0 948,066 + -0.4 948,074 - -0.5 948,089 - -1.3 948,124 + -0.0 948,137 + -0.2 948,139 + -3.5 948,230 - +0.1
Or see this region's nucleotide sequence