Experiment: Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0834 and Atu0835 are separated by 137 nucleotides Atu0835 and Atu0836 are separated by 229 nucleotides Atu0836 and Atu0837 are separated by 84 nucleotides Atu0837 and Atu0838 are separated by 147 nucleotides
Atu0834: Atu0834 - hypothetical protein, at 833,509 to 834,507
Atu0834
Atu0835: Atu0835 - glutathione S-transferase, at 834,645 to 835,265
Atu0835
Atu0836: Atu0836 - Glutathione-S-transferase, at 835,495 to 836,154
Atu0836
Atu0837: Atu0837 - transcriptional regulator, MarR family, at 836,239 to 836,754
Atu0837
Atu0838: Atu0838 - MFS permease, at 836,902 to 838,425
Atu0838
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 834.562 kb on - strand at 834.571 kb on - strand at 834.724 kb on - strand, within Atu0835 at 834.724 kb on - strand, within Atu0835 at 834.724 kb on - strand, within Atu0835 at 834.952 kb on + strand, within Atu0835 at 834.970 kb on + strand, within Atu0835 at 834.999 kb on + strand, within Atu0835 at 835.022 kb on + strand, within Atu0835 at 835.030 kb on - strand, within Atu0835 at 835.057 kb on + strand, within Atu0835 at 835.057 kb on + strand, within Atu0835 at 835.057 kb on + strand, within Atu0835 at 835.090 kb on + strand, within Atu0835 at 835.090 kb on + strand, within Atu0835 at 835.090 kb on + strand, within Atu0835 at 835.098 kb on + strand, within Atu0835 at 835.098 kb on - strand, within Atu0835 at 835.103 kb on + strand, within Atu0835 at 835.106 kb on - strand, within Atu0835 at 835.194 kb on - strand, within Atu0835 at 835.202 kb on - strand, within Atu0835 at 835.344 kb on - strand at 835.375 kb on - strand at 835.377 kb on + strand at 835.394 kb on + strand at 835.531 kb on + strand at 835.774 kb on + strand, within Atu0836 at 835.978 kb on - strand, within Atu0836 at 836.017 kb on - strand, within Atu0836 at 836.017 kb on - strand, within Atu0836 at 836.166 kb on + strand at 836.240 kb on - strand at 836.479 kb on - strand, within Atu0837 at 836.489 kb on - strand, within Atu0837 at 836.525 kb on + strand, within Atu0837 at 836.534 kb on - strand, within Atu0837 at 836.613 kb on + strand, within Atu0837 at 836.621 kb on - strand, within Atu0837 at 836.753 kb on + strand at 836.801 kb on + strand at 836.899 kb on + strand at 837.035 kb on + strand at 837.083 kb on + strand, within Atu0838
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 834,562 - +0.9 834,571 - +0.6 834,724 - Atu0835 0.13 +1.2 834,724 - Atu0835 0.13 +0.7 834,724 - Atu0835 0.13 +0.4 834,952 + Atu0835 0.49 +0.9 834,970 + Atu0835 0.52 +0.6 834,999 + Atu0835 0.57 +0.3 835,022 + Atu0835 0.61 +0.4 835,030 - Atu0835 0.62 +2.6 835,057 + Atu0835 0.66 +0.4 835,057 + Atu0835 0.66 -0.2 835,057 + Atu0835 0.66 -0.2 835,090 + Atu0835 0.72 +0.4 835,090 + Atu0835 0.72 +0.2 835,090 + Atu0835 0.72 +1.2 835,098 + Atu0835 0.73 +0.3 835,098 - Atu0835 0.73 +0.7 835,103 + Atu0835 0.74 +2.4 835,106 - Atu0835 0.74 -0.0 835,194 - Atu0835 0.88 +0.5 835,202 - Atu0835 0.90 +0.2 835,344 - -0.5 835,375 - -0.6 835,377 + +0.1 835,394 + +0.2 835,531 + +1.5 835,774 + Atu0836 0.42 +0.4 835,978 - Atu0836 0.73 +2.2 836,017 - Atu0836 0.79 -3.0 836,017 - Atu0836 0.79 -2.1 836,166 + +0.4 836,240 - +0.8 836,479 - Atu0837 0.47 -0.6 836,489 - Atu0837 0.48 -3.5 836,525 + Atu0837 0.55 +1.4 836,534 - Atu0837 0.57 -1.9 836,613 + Atu0837 0.72 -1.4 836,621 - Atu0837 0.74 -1.7 836,753 + -0.1 836,801 + -0.4 836,899 + -1.6 837,035 + -0.2 837,083 + Atu0838 0.12 +1.6
Or see this region's nucleotide sequence