Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5428 and Atu5429 are separated by 29 nucleotides Atu5429 and Atu5430 are separated by 415 nucleotides
Atu5428: Atu5428 - DNA-damage-inducible protein F, at 422,061 to 423,398
Atu5428
Atu5429: Atu5429 - transcriptional regulator, at 423,428 to 423,595
Atu5429
Atu5430: Atu5430 - hypothetical protein, at 424,011 to 424,433
Atu5430
Position (kb) 423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 422.505 kb on - strand, within Atu5428 at 422.593 kb on - strand, within Atu5428 at 422.611 kb on + strand, within Atu5428 at 422.640 kb on + strand, within Atu5428 at 422.648 kb on - strand, within Atu5428 at 422.698 kb on - strand, within Atu5428 at 422.698 kb on - strand, within Atu5428 at 422.739 kb on - strand, within Atu5428 at 422.748 kb on - strand, within Atu5428 at 422.798 kb on - strand, within Atu5428 at 422.840 kb on - strand, within Atu5428 at 422.885 kb on + strand, within Atu5428 at 423.075 kb on + strand, within Atu5428 at 423.103 kb on + strand, within Atu5428 at 423.134 kb on + strand, within Atu5428 at 423.151 kb on - strand, within Atu5428 at 423.236 kb on + strand, within Atu5428 at 423.243 kb on - strand, within Atu5428 at 423.279 kb on + strand at 423.287 kb on - strand at 423.299 kb on - strand at 423.453 kb on + strand, within Atu5429 at 423.498 kb on + strand, within Atu5429 at 423.506 kb on - strand, within Atu5429 at 423.506 kb on - strand, within Atu5429 at 423.511 kb on - strand, within Atu5429 at 423.536 kb on + strand, within Atu5429 at 423.536 kb on + strand, within Atu5429 at 423.538 kb on + strand, within Atu5429 at 423.564 kb on + strand, within Atu5429 at 423.625 kb on - strand at 423.711 kb on - strand at 423.733 kb on - strand at 423.788 kb on + strand at 423.925 kb on - strand at 423.942 kb on + strand at 424.041 kb on + strand at 424.049 kb on - strand at 424.178 kb on - strand, within Atu5430 at 424.287 kb on - strand, within Atu5430 at 424.341 kb on + strand, within Atu5430 at 424.392 kb on + strand at 424.430 kb on + strand at 424.451 kb on - strand at 424.487 kb on - strand at 424.500 kb on + strand at 424.539 kb on - strand at 424.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 422,505 - Atu5428 0.33 +0.1 422,593 - Atu5428 0.40 -1.3 422,611 + Atu5428 0.41 +0.2 422,640 + Atu5428 0.43 -1.4 422,648 - Atu5428 0.44 -3.4 422,698 - Atu5428 0.48 +0.7 422,698 - Atu5428 0.48 +0.5 422,739 - Atu5428 0.51 -2.3 422,748 - Atu5428 0.51 +0.6 422,798 - Atu5428 0.55 +0.5 422,840 - Atu5428 0.58 +0.6 422,885 + Atu5428 0.62 +0.3 423,075 + Atu5428 0.76 -0.7 423,103 + Atu5428 0.78 +0.3 423,134 + Atu5428 0.80 +0.7 423,151 - Atu5428 0.81 -0.3 423,236 + Atu5428 0.88 +0.6 423,243 - Atu5428 0.88 +0.4 423,279 + +0.1 423,287 - -0.9 423,299 - -0.9 423,453 + Atu5429 0.15 +0.1 423,498 + Atu5429 0.42 -0.7 423,506 - Atu5429 0.46 -1.2 423,506 - Atu5429 0.46 -2.6 423,511 - Atu5429 0.49 -1.1 423,536 + Atu5429 0.64 +0.5 423,536 + Atu5429 0.64 -0.7 423,538 + Atu5429 0.65 -2.1 423,564 + Atu5429 0.81 -2.1 423,625 - +0.8 423,711 - -1.2 423,733 - +0.3 423,788 + +0.2 423,925 - -2.7 423,942 + +1.1 424,041 + +0.9 424,049 - +0.4 424,178 - Atu5430 0.39 +1.7 424,287 - Atu5430 0.65 -2.1 424,341 + Atu5430 0.78 +1.4 424,392 + +0.0 424,430 + +0.2 424,451 - -0.5 424,487 - +2.6 424,500 + -0.5 424,539 - -0.1 424,558 - -0.5
Or see this region's nucleotide sequence