Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3393 and Atu3394 overlap by 4 nucleotides Atu3394 and Atu3395 overlap by 4 nucleotides Atu3395 and Atu3396 are separated by 71 nucleotides
Atu3393: Atu3393 - pseudoazurin, at 437,676 to 438,116
Atu3393
Atu3394: Atu3394 - iron ABC transporter ATPase, at 438,113 to 438,913
Atu3394
Atu3395: Atu3395 - iron (III ABC transporter permease ABC transporter permease, at 438,910 to 439,863
Atu3395
Atu3396: Atu3396 - ABC transporter substrate-binding protein, at 439,935 to 440,966
Atu3396
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 438.070 kb on + strand, within Atu3393 at 438.088 kb on - strand at 438.107 kb on - strand at 438.292 kb on + strand, within Atu3394 at 438.784 kb on - strand, within Atu3394 at 438.801 kb on - strand, within Atu3394 at 438.988 kb on - strand at 439.080 kb on - strand, within Atu3395 at 439.083 kb on + strand, within Atu3395 at 439.089 kb on + strand, within Atu3395 at 439.187 kb on + strand, within Atu3395 at 439.207 kb on - strand, within Atu3395 at 439.258 kb on + strand, within Atu3395 at 439.274 kb on + strand, within Atu3395 at 439.377 kb on - strand, within Atu3395 at 439.480 kb on + strand, within Atu3395 at 439.507 kb on - strand, within Atu3395 at 439.682 kb on - strand, within Atu3395 at 439.742 kb on + strand, within Atu3395 at 439.742 kb on - strand, within Atu3395 at 439.754 kb on + strand, within Atu3395 at 439.802 kb on + strand at 439.991 kb on - strand at 440.053 kb on - strand, within Atu3396 at 440.242 kb on + strand, within Atu3396 at 440.354 kb on - strand, within Atu3396 at 440.358 kb on - strand, within Atu3396 at 440.358 kb on - strand, within Atu3396 at 440.358 kb on - strand, within Atu3396 at 440.394 kb on + strand, within Atu3396 at 440.467 kb on - strand, within Atu3396 at 440.486 kb on + strand, within Atu3396 at 440.494 kb on - strand, within Atu3396 at 440.531 kb on + strand, within Atu3396 at 440.628 kb on - strand, within Atu3396 at 440.635 kb on - strand, within Atu3396 at 440.635 kb on - strand, within Atu3396 at 440.694 kb on - strand, within Atu3396 at 440.710 kb on - strand, within Atu3396 at 440.710 kb on - strand, within Atu3396 at 440.728 kb on + strand, within Atu3396 at 440.795 kb on + strand, within Atu3396 at 440.801 kb on + strand, within Atu3396 at 440.823 kb on - strand, within Atu3396
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 438,070 + Atu3393 0.89 -3.6 438,088 - +0.1 438,107 - +1.5 438,292 + Atu3394 0.22 -0.3 438,784 - Atu3394 0.84 -0.4 438,801 - Atu3394 0.86 -1.0 438,988 - -0.3 439,080 - Atu3395 0.18 -1.2 439,083 + Atu3395 0.18 -0.3 439,089 + Atu3395 0.19 -0.7 439,187 + Atu3395 0.29 -0.3 439,207 - Atu3395 0.31 -1.3 439,258 + Atu3395 0.36 -1.8 439,274 + Atu3395 0.38 -1.1 439,377 - Atu3395 0.49 -1.7 439,480 + Atu3395 0.60 -0.0 439,507 - Atu3395 0.63 -0.9 439,682 - Atu3395 0.81 +0.1 439,742 + Atu3395 0.87 -0.1 439,742 - Atu3395 0.87 -0.3 439,754 + Atu3395 0.88 +0.6 439,802 + +0.0 439,991 - +1.6 440,053 - Atu3396 0.11 -1.4 440,242 + Atu3396 0.30 +0.8 440,354 - Atu3396 0.41 +0.0 440,358 - Atu3396 0.41 +0.6 440,358 - Atu3396 0.41 -0.2 440,358 - Atu3396 0.41 +1.3 440,394 + Atu3396 0.44 +0.1 440,467 - Atu3396 0.52 -2.9 440,486 + Atu3396 0.53 -1.0 440,494 - Atu3396 0.54 +1.0 440,531 + Atu3396 0.58 -0.1 440,628 - Atu3396 0.67 +1.1 440,635 - Atu3396 0.68 -1.3 440,635 - Atu3396 0.68 -1.8 440,694 - Atu3396 0.74 +0.4 440,710 - Atu3396 0.75 +0.5 440,710 - Atu3396 0.75 +0.4 440,728 + Atu3396 0.77 -0.4 440,795 + Atu3396 0.83 -1.2 440,801 + Atu3396 0.84 -1.3 440,823 - Atu3396 0.86 -0.6
Or see this region's nucleotide sequence