Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3370 and Atu3371 are separated by 32 nucleotides Atu3371 and Atu3372 are separated by 233 nucleotides
Atu3370: Atu3370 - sugar ABC transporter permease, at 410,653 to 411,681
Atu3370
Atu3371: Atu3371 - sugar ABC transporter ATPase, at 411,714 to 413,255
Atu3371
Atu3372: Atu3372 - sugar ABC transporter substrate-binding protein, at 413,489 to 414,418
Atu3372
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 410.718 kb on - strand at 410.772 kb on - strand, within Atu3370 at 410.881 kb on + strand, within Atu3370 at 410.918 kb on - strand, within Atu3370 at 410.963 kb on + strand, within Atu3370 at 410.977 kb on - strand, within Atu3370 at 410.977 kb on - strand, within Atu3370 at 410.985 kb on - strand, within Atu3370 at 411.057 kb on + strand, within Atu3370 at 411.067 kb on - strand, within Atu3370 at 411.125 kb on + strand, within Atu3370 at 411.133 kb on - strand, within Atu3370 at 411.207 kb on + strand, within Atu3370 at 411.327 kb on + strand, within Atu3370 at 411.331 kb on + strand, within Atu3370 at 411.451 kb on - strand, within Atu3370 at 411.736 kb on + strand at 411.738 kb on - strand at 411.744 kb on - strand at 411.744 kb on - strand at 411.783 kb on + strand at 411.922 kb on - strand, within Atu3371 at 411.922 kb on - strand, within Atu3371 at 411.973 kb on - strand, within Atu3371 at 412.075 kb on + strand, within Atu3371 at 412.130 kb on + strand, within Atu3371 at 412.185 kb on - strand, within Atu3371 at 412.330 kb on + strand, within Atu3371 at 412.448 kb on - strand, within Atu3371 at 412.475 kb on + strand, within Atu3371 at 412.526 kb on + strand, within Atu3371 at 412.579 kb on + strand, within Atu3371 at 412.677 kb on - strand, within Atu3371 at 412.715 kb on + strand, within Atu3371 at 412.754 kb on + strand, within Atu3371 at 412.847 kb on - strand, within Atu3371 at 412.921 kb on - strand, within Atu3371 at 412.932 kb on + strand, within Atu3371 at 413.107 kb on + strand at 413.113 kb on + strand at 413.119 kb on + strand at 413.132 kb on - strand at 413.142 kb on - strand at 413.253 kb on - strand at 413.312 kb on + strand at 413.312 kb on + strand at 413.335 kb on + strand at 413.367 kb on - strand at 413.396 kb on - strand at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.614 kb on + strand, within Atu3372 at 413.622 kb on - strand, within Atu3372 at 413.622 kb on - strand, within Atu3372 at 413.622 kb on - strand, within Atu3372 at 413.645 kb on - strand, within Atu3372 at 413.678 kb on - strand, within Atu3372 at 413.719 kb on - strand, within Atu3372 at 413.807 kb on - strand, within Atu3372 at 413.960 kb on + strand, within Atu3372 at 413.970 kb on + strand, within Atu3372 at 414.096 kb on + strand, within Atu3372 at 414.096 kb on + strand, within Atu3372 at 414.104 kb on - strand, within Atu3372 at 414.165 kb on + strand, within Atu3372 at 414.236 kb on + strand, within Atu3372 at 414.239 kb on - strand, within Atu3372 at 414.241 kb on - strand, within Atu3372 at 414.244 kb on - strand, within Atu3372 at 414.246 kb on + strand, within Atu3372
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 410,718 - -4.0 410,772 - Atu3370 0.12 +0.1 410,881 + Atu3370 0.22 +1.3 410,918 - Atu3370 0.26 +0.8 410,963 + Atu3370 0.30 -0.7 410,977 - Atu3370 0.31 +0.7 410,977 - Atu3370 0.31 +0.4 410,985 - Atu3370 0.32 +0.2 411,057 + Atu3370 0.39 -0.8 411,067 - Atu3370 0.40 -0.6 411,125 + Atu3370 0.46 -1.4 411,133 - Atu3370 0.47 +0.0 411,207 + Atu3370 0.54 -0.1 411,327 + Atu3370 0.66 +1.2 411,331 + Atu3370 0.66 +0.9 411,451 - Atu3370 0.78 -0.4 411,736 + +0.9 411,738 - -0.3 411,744 - -1.3 411,744 - +1.6 411,783 + -0.0 411,922 - Atu3371 0.13 -0.9 411,922 - Atu3371 0.13 -1.0 411,973 - Atu3371 0.17 +0.2 412,075 + Atu3371 0.23 -0.4 412,130 + Atu3371 0.27 -0.4 412,185 - Atu3371 0.31 +0.2 412,330 + Atu3371 0.40 -0.8 412,448 - Atu3371 0.48 -1.1 412,475 + Atu3371 0.49 -0.5 412,526 + Atu3371 0.53 +1.2 412,579 + Atu3371 0.56 +0.2 412,677 - Atu3371 0.62 -0.3 412,715 + Atu3371 0.65 +1.1 412,754 + Atu3371 0.67 -0.3 412,847 - Atu3371 0.73 -2.8 412,921 - Atu3371 0.78 -0.0 412,932 + Atu3371 0.79 -1.5 413,107 + -0.6 413,113 + +0.3 413,119 + +0.9 413,132 - -1.1 413,142 - +0.8 413,253 - -0.1 413,312 + +0.2 413,312 + -0.7 413,335 + +0.2 413,367 - -0.1 413,396 - -0.1 413,604 + Atu3372 0.12 +0.0 413,604 + Atu3372 0.12 -1.3 413,604 + Atu3372 0.12 -1.8 413,604 + Atu3372 0.12 -2.2 413,604 + Atu3372 0.12 +0.7 413,612 - Atu3372 0.13 -0.0 413,612 - Atu3372 0.13 +0.0 413,612 - Atu3372 0.13 +0.5 413,612 - Atu3372 0.13 +0.2 413,614 + Atu3372 0.13 +2.7 413,622 - Atu3372 0.14 +1.1 413,622 - Atu3372 0.14 +1.2 413,622 - Atu3372 0.14 -0.2 413,645 - Atu3372 0.17 -0.2 413,678 - Atu3372 0.20 -0.2 413,719 - Atu3372 0.25 -2.2 413,807 - Atu3372 0.34 -0.3 413,960 + Atu3372 0.51 -1.3 413,970 + Atu3372 0.52 +0.7 414,096 + Atu3372 0.65 -0.2 414,096 + Atu3372 0.65 -0.9 414,104 - Atu3372 0.66 -0.7 414,165 + Atu3372 0.73 -0.5 414,236 + Atu3372 0.80 -0.1 414,239 - Atu3372 0.81 +0.1 414,241 - Atu3372 0.81 -0.5 414,244 - Atu3372 0.81 -0.6 414,246 + Atu3372 0.81 -0.7
Or see this region's nucleotide sequence