Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3369 and Atu3370 are separated by 82 nucleotides Atu3370 and Atu3371 are separated by 32 nucleotides
Atu3369: Atu3369 - hypothetical protein, at 409,815 to 410,570
Atu3369
Atu3370: Atu3370 - sugar ABC transporter permease, at 410,653 to 411,681
Atu3370
Atu3371: Atu3371 - sugar ABC transporter ATPase, at 411,714 to 413,255
Atu3371
Position (kb) 410
411
412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 409.711 kb on + strand at 409.729 kb on + strand at 409.913 kb on - strand, within Atu3369 at 409.993 kb on - strand, within Atu3369 at 410.029 kb on + strand, within Atu3369 at 410.077 kb on - strand, within Atu3369 at 410.147 kb on - strand, within Atu3369 at 410.221 kb on + strand, within Atu3369 at 410.221 kb on - strand, within Atu3369 at 410.221 kb on - strand, within Atu3369 at 410.245 kb on - strand, within Atu3369 at 410.306 kb on - strand, within Atu3369 at 410.310 kb on + strand, within Atu3369 at 410.486 kb on - strand, within Atu3369 at 410.527 kb on - strand at 410.527 kb on - strand at 410.531 kb on + strand at 410.531 kb on + strand at 410.552 kb on + strand at 410.564 kb on + strand at 410.572 kb on - strand at 410.652 kb on - strand at 410.710 kb on + strand at 410.718 kb on - strand at 410.772 kb on - strand, within Atu3370 at 410.881 kb on + strand, within Atu3370 at 410.918 kb on - strand, within Atu3370 at 410.963 kb on + strand, within Atu3370 at 410.977 kb on - strand, within Atu3370 at 410.977 kb on - strand, within Atu3370 at 410.985 kb on - strand, within Atu3370 at 411.057 kb on + strand, within Atu3370 at 411.067 kb on - strand, within Atu3370 at 411.125 kb on + strand, within Atu3370 at 411.133 kb on - strand, within Atu3370 at 411.207 kb on + strand, within Atu3370 at 411.327 kb on + strand, within Atu3370 at 411.331 kb on + strand, within Atu3370 at 411.451 kb on - strand, within Atu3370 at 411.736 kb on + strand at 411.738 kb on - strand at 411.744 kb on - strand at 411.744 kb on - strand at 411.783 kb on + strand at 411.922 kb on - strand, within Atu3371 at 411.922 kb on - strand, within Atu3371 at 411.973 kb on - strand, within Atu3371 at 412.075 kb on + strand, within Atu3371 at 412.130 kb on + strand, within Atu3371 at 412.185 kb on - strand, within Atu3371 at 412.330 kb on + strand, within Atu3371 at 412.448 kb on - strand, within Atu3371 at 412.475 kb on + strand, within Atu3371 at 412.526 kb on + strand, within Atu3371 at 412.579 kb on + strand, within Atu3371 at 412.677 kb on - strand, within Atu3371
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 409,711 + -0.6 409,729 + +1.2 409,913 - Atu3369 0.13 +0.1 409,993 - Atu3369 0.24 -1.4 410,029 + Atu3369 0.28 +0.5 410,077 - Atu3369 0.35 -0.9 410,147 - Atu3369 0.44 +0.0 410,221 + Atu3369 0.54 +0.2 410,221 - Atu3369 0.54 -0.3 410,221 - Atu3369 0.54 -1.3 410,245 - Atu3369 0.57 +0.6 410,306 - Atu3369 0.65 +1.3 410,310 + Atu3369 0.65 -0.8 410,486 - Atu3369 0.89 -2.9 410,527 - +0.9 410,527 - -0.3 410,531 + +0.5 410,531 + -2.7 410,552 + -0.2 410,564 + +0.7 410,572 - -0.3 410,652 - -0.3 410,710 + -1.3 410,718 - -4.0 410,772 - Atu3370 0.12 +0.1 410,881 + Atu3370 0.22 +1.3 410,918 - Atu3370 0.26 +0.8 410,963 + Atu3370 0.30 -0.7 410,977 - Atu3370 0.31 +0.7 410,977 - Atu3370 0.31 +0.4 410,985 - Atu3370 0.32 +0.2 411,057 + Atu3370 0.39 -0.8 411,067 - Atu3370 0.40 -0.6 411,125 + Atu3370 0.46 -1.4 411,133 - Atu3370 0.47 +0.0 411,207 + Atu3370 0.54 -0.1 411,327 + Atu3370 0.66 +1.2 411,331 + Atu3370 0.66 +0.9 411,451 - Atu3370 0.78 -0.4 411,736 + +0.9 411,738 - -0.3 411,744 - -1.3 411,744 - +1.6 411,783 + -0.0 411,922 - Atu3371 0.13 -0.9 411,922 - Atu3371 0.13 -1.0 411,973 - Atu3371 0.17 +0.2 412,075 + Atu3371 0.23 -0.4 412,130 + Atu3371 0.27 -0.4 412,185 - Atu3371 0.31 +0.2 412,330 + Atu3371 0.40 -0.8 412,448 - Atu3371 0.48 -1.1 412,475 + Atu3371 0.49 -0.5 412,526 + Atu3371 0.53 +1.2 412,579 + Atu3371 0.56 +0.2 412,677 - Atu3371 0.62 -0.3
Or see this region's nucleotide sequence