Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8187 and Atu3311 are separated by 433 nucleotides Atu3311 and Atu3312 are separated by 52 nucleotides
Atu8187: Atu8187 - hypothetical protein, at 340,535 to 341,434
Atu8187
Atu3311: Atu3311 - phosphomannose isomerase, at 341,868 to 343,052
Atu3311
Atu3312: Atu3312 - hypothetical protein, at 343,105 to 344,067
Atu3312
Position (kb) 341
342
343
344 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 340.905 kb on + strand, within Atu8187 at 340.920 kb on - strand, within Atu8187 at 341.302 kb on + strand, within Atu8187 at 341.532 kb on + strand at 341.559 kb on - strand at 341.731 kb on + strand at 341.739 kb on - strand at 341.739 kb on - strand at 341.920 kb on - strand at 341.946 kb on + strand at 341.978 kb on - strand at 342.071 kb on - strand, within Atu3311 at 342.076 kb on - strand, within Atu3311 at 342.138 kb on - strand, within Atu3311 at 342.148 kb on - strand, within Atu3311 at 342.148 kb on - strand, within Atu3311 at 342.364 kb on - strand, within Atu3311 at 342.403 kb on + strand, within Atu3311 at 342.440 kb on + strand, within Atu3311 at 342.440 kb on + strand, within Atu3311 at 342.485 kb on - strand, within Atu3311 at 342.499 kb on + strand, within Atu3311 at 342.560 kb on + strand, within Atu3311 at 342.568 kb on - strand, within Atu3311 at 342.568 kb on - strand, within Atu3311 at 342.568 kb on - strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.570 kb on + strand, within Atu3311 at 342.578 kb on - strand, within Atu3311 at 342.578 kb on - strand, within Atu3311 at 342.578 kb on - strand, within Atu3311 at 342.628 kb on + strand, within Atu3311 at 342.680 kb on + strand, within Atu3311 at 342.819 kb on + strand, within Atu3311 at 342.868 kb on - strand, within Atu3311 at 342.871 kb on + strand, within Atu3311 at 342.886 kb on + strand, within Atu3311 at 342.906 kb on + strand, within Atu3311 at 342.920 kb on + strand, within Atu3311 at 342.920 kb on + strand, within Atu3311 at 342.920 kb on + strand, within Atu3311 at 342.928 kb on - strand, within Atu3311 at 342.935 kb on - strand at 343.004 kb on + strand at 343.044 kb on + strand at 343.108 kb on + strand at 343.142 kb on - strand at 343.284 kb on + strand, within Atu3312 at 343.318 kb on - strand, within Atu3312 at 343.322 kb on + strand, within Atu3312 at 343.328 kb on - strand, within Atu3312 at 343.463 kb on + strand, within Atu3312 at 343.515 kb on - strand, within Atu3312 at 343.678 kb on + strand, within Atu3312 at 343.735 kb on - strand, within Atu3312 at 343.750 kb on + strand, within Atu3312 at 343.758 kb on - strand, within Atu3312 at 343.758 kb on - strand, within Atu3312 at 343.779 kb on - strand, within Atu3312 at 343.784 kb on - strand, within Atu3312 at 343.834 kb on - strand, within Atu3312 at 343.858 kb on - strand, within Atu3312 at 343.858 kb on - strand, within Atu3312 at 343.965 kb on - strand, within Atu3312
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 340,905 + Atu8187 0.41 +2.1 340,920 - Atu8187 0.43 +0.8 341,302 + Atu8187 0.85 +0.7 341,532 + -2.5 341,559 - -0.3 341,731 + +0.4 341,739 - -0.0 341,739 - -2.9 341,920 - +0.9 341,946 + -3.8 341,978 - -2.8 342,071 - Atu3311 0.17 -4.2 342,076 - Atu3311 0.18 -3.1 342,138 - Atu3311 0.23 -2.1 342,148 - Atu3311 0.24 -3.5 342,148 - Atu3311 0.24 -4.8 342,364 - Atu3311 0.42 -4.0 342,403 + Atu3311 0.45 -2.2 342,440 + Atu3311 0.48 -1.5 342,440 + Atu3311 0.48 -1.6 342,485 - Atu3311 0.52 -2.8 342,499 + Atu3311 0.53 -4.1 342,560 + Atu3311 0.58 -4.2 342,568 - Atu3311 0.59 -5.0 342,568 - Atu3311 0.59 -6.9 342,568 - Atu3311 0.59 -2.1 342,570 + Atu3311 0.59 -1.0 342,570 + Atu3311 0.59 -5.2 342,570 + Atu3311 0.59 -6.6 342,570 + Atu3311 0.59 -3.8 342,570 + Atu3311 0.59 -5.1 342,578 - Atu3311 0.60 -2.0 342,578 - Atu3311 0.60 -3.1 342,578 - Atu3311 0.60 -2.2 342,628 + Atu3311 0.64 -5.6 342,680 + Atu3311 0.69 -1.4 342,819 + Atu3311 0.80 -3.8 342,868 - Atu3311 0.84 -4.4 342,871 + Atu3311 0.85 -3.3 342,886 + Atu3311 0.86 -2.8 342,906 + Atu3311 0.88 -5.5 342,920 + Atu3311 0.89 -4.9 342,920 + Atu3311 0.89 -5.0 342,920 + Atu3311 0.89 -2.8 342,928 - Atu3311 0.89 -4.6 342,935 - -3.0 343,004 + -4.0 343,044 + +0.0 343,108 + -3.1 343,142 - -0.7 343,284 + Atu3312 0.19 -1.8 343,318 - Atu3312 0.22 -1.8 343,322 + Atu3312 0.23 -1.7 343,328 - Atu3312 0.23 -0.3 343,463 + Atu3312 0.37 +0.3 343,515 - Atu3312 0.43 -0.5 343,678 + Atu3312 0.60 +1.2 343,735 - Atu3312 0.65 -0.3 343,750 + Atu3312 0.67 -0.6 343,758 - Atu3312 0.68 -2.7 343,758 - Atu3312 0.68 -2.8 343,779 - Atu3312 0.70 -0.4 343,784 - Atu3312 0.71 -1.2 343,834 - Atu3312 0.76 +0.0 343,858 - Atu3312 0.78 -3.1 343,858 - Atu3312 0.78 +0.1 343,965 - Atu3312 0.89 -1.6
Or see this region's nucleotide sequence