Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3247 and Atu3248 overlap by 4 nucleotides Atu3248 and Atu3249 are separated by 35 nucleotides Atu3249 and Atu3250 are separated by 62 nucleotides Atu3250 and Atu3251 are separated by 113 nucleotides
Atu3247: Atu3247 - cell division topological specificity factor MinE, at 265,951 to 266,211
Atu3247
Atu3248: Atu3248 - cell division inhibitor, at 266,208 to 267,023
Atu3248
Atu3249: Atu3249 - septum formation inhibitor, at 267,059 to 267,778
Atu3249
Atu3250: Atu3250 - hypothetical protein, at 267,841 to 268,083
Atu3250
Atu3251: Atu3251 - haloacid dehalogenase, at 268,197 to 268,883
Atu3251
Position (kb) 267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 266.258 kb on - strand at 266.313 kb on + strand, within Atu3248 at 266.378 kb on + strand, within Atu3248 at 266.396 kb on + strand, within Atu3248 at 266.406 kb on + strand, within Atu3248 at 266.409 kb on - strand, within Atu3248 at 266.577 kb on - strand, within Atu3248 at 266.587 kb on - strand, within Atu3248 at 266.636 kb on + strand, within Atu3248 at 266.682 kb on + strand, within Atu3248 at 266.740 kb on + strand, within Atu3248 at 266.834 kb on - strand, within Atu3248 at 266.847 kb on + strand, within Atu3248 at 266.872 kb on - strand, within Atu3248 at 266.880 kb on - strand, within Atu3248 at 266.917 kb on + strand, within Atu3248 at 266.917 kb on + strand, within Atu3248 at 266.925 kb on - strand, within Atu3248 at 267.027 kb on + strand at 267.028 kb on - strand at 267.032 kb on + strand at 267.032 kb on + strand at 267.040 kb on - strand at 267.040 kb on - strand at 267.155 kb on - strand, within Atu3249 at 267.263 kb on - strand, within Atu3249 at 267.263 kb on - strand, within Atu3249 at 267.347 kb on - strand, within Atu3249 at 267.383 kb on + strand, within Atu3249 at 267.454 kb on + strand, within Atu3249 at 267.646 kb on + strand, within Atu3249 at 267.654 kb on - strand, within Atu3249 at 267.658 kb on - strand, within Atu3249 at 267.966 kb on + strand, within Atu3250 at 267.966 kb on + strand, within Atu3250 at 268.176 kb on - strand at 268.264 kb on - strand at 268.285 kb on - strand, within Atu3251 at 268.291 kb on + strand, within Atu3251 at 268.341 kb on - strand, within Atu3251 at 268.394 kb on - strand, within Atu3251 at 268.461 kb on - strand, within Atu3251 at 268.541 kb on - strand, within Atu3251 at 268.550 kb on + strand, within Atu3251 at 268.593 kb on - strand, within Atu3251 at 268.633 kb on - strand, within Atu3251 at 268.686 kb on + strand, within Atu3251 at 268.694 kb on - strand, within Atu3251 at 268.740 kb on + strand, within Atu3251 at 268.750 kb on - strand, within Atu3251 at 268.750 kb on - strand, within Atu3251 at 268.777 kb on + strand, within Atu3251
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 266,258 - -0.2 266,313 + Atu3248 0.13 +0.8 266,378 + Atu3248 0.21 -2.3 266,396 + Atu3248 0.23 -1.1 266,406 + Atu3248 0.24 -2.5 266,409 - Atu3248 0.25 -1.5 266,577 - Atu3248 0.45 -0.7 266,587 - Atu3248 0.46 +3.8 266,636 + Atu3248 0.52 -0.3 266,682 + Atu3248 0.58 -1.4 266,740 + Atu3248 0.65 -0.4 266,834 - Atu3248 0.77 -1.8 266,847 + Atu3248 0.78 -1.6 266,872 - Atu3248 0.81 +0.2 266,880 - Atu3248 0.82 -0.8 266,917 + Atu3248 0.87 +0.7 266,917 + Atu3248 0.87 -0.1 266,925 - Atu3248 0.88 +1.2 267,027 + -2.6 267,028 - -1.1 267,032 + -2.3 267,032 + +0.3 267,040 - -1.4 267,040 - -2.3 267,155 - Atu3249 0.13 -1.0 267,263 - Atu3249 0.28 -1.2 267,263 - Atu3249 0.28 -2.6 267,347 - Atu3249 0.40 -0.9 267,383 + Atu3249 0.45 -2.2 267,454 + Atu3249 0.55 -0.8 267,646 + Atu3249 0.82 -0.1 267,654 - Atu3249 0.83 -1.3 267,658 - Atu3249 0.83 +0.6 267,966 + Atu3250 0.51 -0.8 267,966 + Atu3250 0.51 -1.3 268,176 - -1.5 268,264 - +0.2 268,285 - Atu3251 0.13 -0.1 268,291 + Atu3251 0.14 +0.4 268,341 - Atu3251 0.21 +1.3 268,394 - Atu3251 0.29 -4.1 268,461 - Atu3251 0.38 -2.1 268,541 - Atu3251 0.50 -0.2 268,550 + Atu3251 0.51 +0.6 268,593 - Atu3251 0.58 +1.2 268,633 - Atu3251 0.63 +0.6 268,686 + Atu3251 0.71 -0.1 268,694 - Atu3251 0.72 +0.2 268,740 + Atu3251 0.79 -2.3 268,750 - Atu3251 0.80 -0.7 268,750 - Atu3251 0.80 -2.7 268,777 + Atu3251 0.84 +0.8
Or see this region's nucleotide sequence