Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0994 and Atu0995 are separated by 446 nucleotides Atu0995 and Atu0996 are separated by 83 nucleotides
Atu0994: Atu0994 - electrotransfer ubiquinone oxidoreductase, at 989,626 to 991,290
Atu0994
Atu0995: Atu0995 - hypothetical protein, at 991,737 to 992,480
Atu0995
Atu0996: Atu0996 - zinc-binding dehydrogenase, at 992,564 to 993,580
Atu0996
Position (kb) 991
992
993 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 991.299 kb on + strand at 991.324 kb on - strand at 991.392 kb on - strand at 991.445 kb on - strand at 991.492 kb on + strand at 991.547 kb on + strand at 991.617 kb on - strand at 991.675 kb on + strand at 991.778 kb on + strand at 991.786 kb on - strand at 991.786 kb on - strand at 991.943 kb on + strand, within Atu0995 at 991.956 kb on + strand, within Atu0995 at 991.974 kb on - strand, within Atu0995 at 992.012 kb on + strand, within Atu0995 at 992.019 kb on - strand, within Atu0995 at 992.049 kb on - strand, within Atu0995 at 992.072 kb on + strand, within Atu0995 at 992.080 kb on - strand, within Atu0995 at 992.111 kb on - strand, within Atu0995 at 992.170 kb on - strand, within Atu0995 at 992.176 kb on + strand, within Atu0995 at 992.193 kb on + strand, within Atu0995 at 992.221 kb on - strand, within Atu0995 at 992.294 kb on - strand, within Atu0995 at 992.312 kb on - strand, within Atu0995 at 992.526 kb on + strand at 992.612 kb on - strand at 992.673 kb on + strand, within Atu0996 at 992.678 kb on + strand, within Atu0996 at 992.681 kb on - strand, within Atu0996 at 992.743 kb on - strand, within Atu0996 at 993.021 kb on + strand, within Atu0996 at 993.021 kb on + strand, within Atu0996 at 993.145 kb on - strand, within Atu0996 at 993.220 kb on + strand, within Atu0996 at 993.333 kb on + strand, within Atu0996 at 993.333 kb on + strand, within Atu0996 at 993.341 kb on - strand, within Atu0996 at 993.473 kb on - strand, within Atu0996
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 991,299 + +0.8 991,324 - +0.9 991,392 - +0.4 991,445 - -1.4 991,492 + -2.3 991,547 + +0.6 991,617 - -1.4 991,675 + +0.8 991,778 + -0.3 991,786 - -1.4 991,786 - +1.5 991,943 + Atu0995 0.28 -0.8 991,956 + Atu0995 0.29 -0.5 991,974 - Atu0995 0.32 -1.2 992,012 + Atu0995 0.37 -1.1 992,019 - Atu0995 0.38 -0.4 992,049 - Atu0995 0.42 -0.2 992,072 + Atu0995 0.45 -1.3 992,080 - Atu0995 0.46 -0.5 992,111 - Atu0995 0.50 -1.1 992,170 - Atu0995 0.58 +3.5 992,176 + Atu0995 0.59 -0.1 992,193 + Atu0995 0.61 +1.2 992,221 - Atu0995 0.65 -0.8 992,294 - Atu0995 0.75 -0.1 992,312 - Atu0995 0.77 -0.2 992,526 + -1.4 992,612 - +0.2 992,673 + Atu0996 0.11 -1.6 992,678 + Atu0996 0.11 +1.3 992,681 - Atu0996 0.12 -0.1 992,743 - Atu0996 0.18 +0.5 993,021 + Atu0996 0.45 +1.5 993,021 + Atu0996 0.45 -0.9 993,145 - Atu0996 0.57 +0.1 993,220 + Atu0996 0.65 -2.4 993,333 + Atu0996 0.76 +0.1 993,333 + Atu0996 0.76 +0.5 993,341 - Atu0996 0.76 +0.9 993,473 - Atu0996 0.89 +2.3
Or see this region's nucleotide sequence