Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0353 and Atu0354 are separated by 69 nucleotides Atu0354 and Atu0355 are separated by 30 nucleotides Atu0355 and Atu0356 are separated by 186 nucleotides
Atu0353: Atu0353 - acetyltransferase, at 347,675 to 348,169
Atu0353
Atu0354: Atu0354 - ferric uptake regulator, at 348,239 to 348,667
Atu0354
Atu0355: Atu0355 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 348,698 to 349,492
Atu0355
Atu0356: Atu0356 - miaB protein, at 349,679 to 351,046
Atu0356
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 347.726 kb on - strand, within Atu0353 at 347.770 kb on + strand, within Atu0353 at 347.843 kb on + strand, within Atu0353 at 347.927 kb on + strand, within Atu0353 at 347.965 kb on - strand, within Atu0353 at 347.996 kb on + strand, within Atu0353 at 348.004 kb on - strand, within Atu0353 at 348.024 kb on + strand, within Atu0353 at 348.025 kb on - strand, within Atu0353 at 348.056 kb on - strand, within Atu0353 at 348.061 kb on - strand, within Atu0353 at 348.086 kb on - strand, within Atu0353 at 348.086 kb on - strand, within Atu0353 at 348.112 kb on - strand, within Atu0353 at 348.126 kb on - strand at 348.134 kb on - strand at 348.240 kb on + strand at 348.271 kb on - strand at 348.299 kb on + strand, within Atu0354 at 348.307 kb on - strand, within Atu0354 at 348.362 kb on + strand, within Atu0354 at 348.389 kb on - strand, within Atu0354 at 348.409 kb on + strand, within Atu0354 at 348.420 kb on + strand, within Atu0354 at 348.724 kb on - strand at 348.757 kb on - strand at 348.880 kb on - strand, within Atu0355 at 348.882 kb on + strand, within Atu0355 at 348.882 kb on + strand, within Atu0355 at 348.962 kb on - strand, within Atu0355 at 348.995 kb on + strand, within Atu0355 at 349.069 kb on - strand, within Atu0355 at 349.154 kb on - strand, within Atu0355 at 349.261 kb on + strand, within Atu0355 at 349.268 kb on + strand, within Atu0355 at 349.269 kb on - strand, within Atu0355 at 349.269 kb on - strand, within Atu0355 at 349.311 kb on + strand, within Atu0355 at 349.311 kb on + strand, within Atu0355 at 349.327 kb on - strand, within Atu0355 at 349.454 kb on + strand at 349.461 kb on + strand at 349.502 kb on - strand at 349.574 kb on + strand at 349.694 kb on + strand at 349.694 kb on + strand at 349.702 kb on - strand at 349.839 kb on - strand, within Atu0356 at 349.870 kb on + strand, within Atu0356 at 349.919 kb on + strand, within Atu0356 at 349.927 kb on - strand, within Atu0356 at 350.197 kb on + strand, within Atu0356 at 350.211 kb on + strand, within Atu0356 at 350.213 kb on + strand, within Atu0356 at 350.232 kb on + strand, within Atu0356 at 350.240 kb on - strand, within Atu0356 at 350.240 kb on - strand, within Atu0356 at 350.240 kb on - strand, within Atu0356 at 350.312 kb on - strand, within Atu0356 at 350.318 kb on + strand, within Atu0356 at 350.349 kb on - strand, within Atu0356 at 350.383 kb on + strand, within Atu0356 at 350.383 kb on + strand, within Atu0356 at 350.383 kb on + strand, within Atu0356 at 350.391 kb on - strand, within Atu0356 at 350.391 kb on - strand, within Atu0356 at 350.391 kb on - strand, within Atu0356 at 350.422 kb on + strand, within Atu0356
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 347,726 - Atu0353 0.10 -1.6 347,770 + Atu0353 0.19 +0.1 347,843 + Atu0353 0.34 +0.6 347,927 + Atu0353 0.51 -0.8 347,965 - Atu0353 0.59 -2.9 347,996 + Atu0353 0.65 -1.1 348,004 - Atu0353 0.66 -0.8 348,024 + Atu0353 0.71 -0.7 348,025 - Atu0353 0.71 +0.2 348,056 - Atu0353 0.77 -2.2 348,061 - Atu0353 0.78 +0.5 348,086 - Atu0353 0.83 -1.5 348,086 - Atu0353 0.83 +0.3 348,112 - Atu0353 0.88 -2.4 348,126 - -0.5 348,134 - -0.1 348,240 + -1.1 348,271 - +1.3 348,299 + Atu0354 0.14 -0.0 348,307 - Atu0354 0.16 +1.3 348,362 + Atu0354 0.29 -1.6 348,389 - Atu0354 0.35 +0.7 348,409 + Atu0354 0.40 -2.0 348,420 + Atu0354 0.42 +1.3 348,724 - -2.7 348,757 - -0.5 348,880 - Atu0355 0.23 +1.6 348,882 + Atu0355 0.23 +0.6 348,882 + Atu0355 0.23 -0.9 348,962 - Atu0355 0.33 -1.4 348,995 + Atu0355 0.37 +0.6 349,069 - Atu0355 0.47 +1.4 349,154 - Atu0355 0.57 +0.7 349,261 + Atu0355 0.71 -0.3 349,268 + Atu0355 0.72 -0.1 349,269 - Atu0355 0.72 -3.1 349,269 - Atu0355 0.72 +0.4 349,311 + Atu0355 0.77 +1.7 349,311 + Atu0355 0.77 +1.3 349,327 - Atu0355 0.79 -1.1 349,454 + +0.9 349,461 + +1.4 349,502 - -0.6 349,574 + +1.0 349,694 + -2.2 349,694 + -1.1 349,702 - +0.2 349,839 - Atu0356 0.12 -0.2 349,870 + Atu0356 0.14 -2.2 349,919 + Atu0356 0.18 -0.6 349,927 - Atu0356 0.18 +0.3 350,197 + Atu0356 0.38 +1.8 350,211 + Atu0356 0.39 +0.3 350,213 + Atu0356 0.39 -1.0 350,232 + Atu0356 0.40 +1.4 350,240 - Atu0356 0.41 -2.3 350,240 - Atu0356 0.41 +1.0 350,240 - Atu0356 0.41 -0.7 350,312 - Atu0356 0.46 +2.6 350,318 + Atu0356 0.47 -0.2 350,349 - Atu0356 0.49 -2.1 350,383 + Atu0356 0.51 +0.5 350,383 + Atu0356 0.51 -0.1 350,383 + Atu0356 0.51 +0.4 350,391 - Atu0356 0.52 +0.9 350,391 - Atu0356 0.52 -2.2 350,391 - Atu0356 0.52 -0.0 350,422 + Atu0356 0.54 -0.3
Or see this region's nucleotide sequence