Strain Fitness in Agrobacterium fabrum C58 around Atu0157

Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu8116 and Atu0156 are separated by 12 nucleotidesAtu0156 and Atu0157 are separated by 146 nucleotidesAtu0157 and Atu0158 are separated by 138 nucleotidesAtu0158 and Atu0159 overlap by 1 nucleotides Atu8116: Atu8116 - hypothetical protein, at 161,618 to 162,136 Atu8116 Atu0156: Atu0156 - hypothetical protein, at 162,149 to 162,859 Atu0156 Atu0157: Atu0157 - ABC transporter, substrate binding protein, at 163,006 to 164,007 Atu0157 Atu0158: Atu0158 - ABC transporter, membrane spanning protein, at 164,146 to 164,919 Atu0158 Atu0159: Atu0159 - ABC transporter, nucleotide binding/ATPase protein, at 164,919 to 165,704 Atu0159 Position (kb) 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 162.175 kb on + strandat 162.220 kb on - strand, within Atu0156at 162.269 kb on + strand, within Atu0156at 162.272 kb on - strand, within Atu0156at 162.349 kb on + strand, within Atu0156at 162.440 kb on + strand, within Atu0156at 162.441 kb on + strand, within Atu0156at 162.711 kb on - strand, within Atu0156at 162.717 kb on + strand, within Atu0156at 162.745 kb on + strand, within Atu0156at 162.753 kb on - strand, within Atu0156at 162.807 kb on - strandat 162.807 kb on - strandat 162.828 kb on - strandat 162.903 kb on + strandat 162.911 kb on - strandat 163.103 kb on - strandat 163.114 kb on + strand, within Atu0157at 163.122 kb on - strand, within Atu0157at 163.143 kb on - strand, within Atu0157at 163.182 kb on - strand, within Atu0157at 163.386 kb on - strand, within Atu0157at 163.406 kb on + strand, within Atu0157at 163.422 kb on + strand, within Atu0157at 163.422 kb on + strand, within Atu0157at 163.428 kb on + strand, within Atu0157at 163.428 kb on + strand, within Atu0157at 163.524 kb on - strand, within Atu0157at 163.532 kb on + strand, within Atu0157at 163.667 kb on - strand, within Atu0157at 163.737 kb on + strand, within Atu0157at 163.757 kb on + strand, within Atu0157at 163.757 kb on + strand, within Atu0157at 163.767 kb on + strand, within Atu0157at 163.767 kb on + strand, within Atu0157at 163.767 kb on + strand, within Atu0157at 163.775 kb on - strand, within Atu0157at 163.775 kb on - strand, within Atu0157at 163.959 kb on + strandat 163.993 kb on + strandat 163.994 kb on - strandat 164.073 kb on - strandat 164.084 kb on + strandat 164.153 kb on + strandat 164.155 kb on + strandat 164.155 kb on + strandat 164.164 kb on + strandat 164.164 kb on + strandat 164.221 kb on + strandat 164.221 kb on + strandat 164.359 kb on - strand, within Atu0158at 164.427 kb on + strand, within Atu0158at 164.447 kb on - strand, within Atu0158at 164.480 kb on - strand, within Atu0158at 164.491 kb on + strand, within Atu0158at 164.613 kb on + strand, within Atu0158at 164.621 kb on - strand, within Atu0158at 164.621 kb on - strand, within Atu0158at 164.624 kb on + strand, within Atu0158at 164.624 kb on + strand, within Atu0158at 164.624 kb on + strand, within Atu0158at 164.656 kb on - strand, within Atu0158at 164.719 kb on + strand, within Atu0158at 164.724 kb on + strand, within Atu0158at 164.725 kb on + strand, within Atu0158at 164.733 kb on - strand, within Atu0158at 164.744 kb on - strand, within Atu0158at 164.813 kb on - strand, within Atu0158at 164.848 kb on + strandat 164.857 kb on - strandat 164.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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162,175 + +0.5
162,220 - Atu0156 0.10 +2.1
162,269 + Atu0156 0.17 -0.9
162,272 - Atu0156 0.17 -0.5
162,349 + Atu0156 0.28 -0.3
162,440 + Atu0156 0.41 +0.7
162,441 + Atu0156 0.41 -2.0
162,711 - Atu0156 0.79 +1.6
162,717 + Atu0156 0.80 +0.6
162,745 + Atu0156 0.84 -0.1
162,753 - Atu0156 0.85 +0.1
162,807 - -0.4
162,807 - -0.1
162,828 - -0.2
162,903 + +1.2
162,911 - -2.6
163,103 - -0.2
163,114 + Atu0157 0.11 -0.1
163,122 - Atu0157 0.12 +0.4
163,143 - Atu0157 0.14 -0.2
163,182 - Atu0157 0.18 +2.5
163,386 - Atu0157 0.38 -1.8
163,406 + Atu0157 0.40 -0.0
163,422 + Atu0157 0.42 +1.1
163,422 + Atu0157 0.42 -0.0
163,428 + Atu0157 0.42 +0.7
163,428 + Atu0157 0.42 +0.3
163,524 - Atu0157 0.52 +0.4
163,532 + Atu0157 0.52 +0.3
163,667 - Atu0157 0.66 +0.9
163,737 + Atu0157 0.73 +0.6
163,757 + Atu0157 0.75 -3.0
163,757 + Atu0157 0.75 -0.2
163,767 + Atu0157 0.76 -0.2
163,767 + Atu0157 0.76 +0.7
163,767 + Atu0157 0.76 -2.3
163,775 - Atu0157 0.77 +2.9
163,775 - Atu0157 0.77 +1.1
163,959 + +0.5
163,993 + +0.1
163,994 - +0.6
164,073 - +1.0
164,084 + +1.1
164,153 + -0.0
164,155 + +0.2
164,155 + +1.1
164,164 + -0.0
164,164 + -2.5
164,221 + +0.2
164,221 + -2.0
164,359 - Atu0158 0.28 +0.1
164,427 + Atu0158 0.36 -0.2
164,447 - Atu0158 0.39 -0.1
164,480 - Atu0158 0.43 -0.3
164,491 + Atu0158 0.45 -0.7
164,613 + Atu0158 0.60 +2.3
164,621 - Atu0158 0.61 -1.5
164,621 - Atu0158 0.61 -0.4
164,624 + Atu0158 0.62 +1.4
164,624 + Atu0158 0.62 -2.6
164,624 + Atu0158 0.62 +0.5
164,656 - Atu0158 0.66 +0.6
164,719 + Atu0158 0.74 -1.3
164,724 + Atu0158 0.75 +0.7
164,725 + Atu0158 0.75 -0.1
164,733 - Atu0158 0.76 +1.6
164,744 - Atu0158 0.77 +0.6
164,813 - Atu0158 0.86 +0.8
164,848 + +0.2
164,857 - -3.0
164,896 - -0.4

Or see this region's nucleotide sequence