Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5195 and Atu5196 are separated by 124 nucleotides Atu5196 and Atu5197 are separated by 60 nucleotides Atu5197 and Atu5198 are separated by 30 nucleotides
Atu5195: Atu5195 - LysR family transcriptional regulator, at 191,259 to 192,176
Atu5195
Atu5196: Atu5196 - hypothetical protein, at 192,301 to 193,017
Atu5196
Atu5197: Atu5197 - LysR family transcriptional regulator, at 193,078 to 194,055
Atu5197
Atu5198: Atu5198 - putative oxidoreductase, at 194,086 to 195,102
Atu5198
Position (kb) 193
194
195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 192.145 kb on + strand at 192.160 kb on + strand at 192.168 kb on - strand at 192.168 kb on - strand at 192.170 kb on + strand at 192.268 kb on + strand at 192.361 kb on - strand at 192.372 kb on + strand at 192.389 kb on - strand, within Atu5196 at 192.389 kb on - strand, within Atu5196 at 192.389 kb on - strand, within Atu5196 at 192.389 kb on - strand, within Atu5196 at 192.401 kb on + strand, within Atu5196 at 192.410 kb on + strand, within Atu5196 at 192.410 kb on + strand, within Atu5196 at 192.414 kb on - strand, within Atu5196 at 192.417 kb on + strand, within Atu5196 at 192.544 kb on - strand, within Atu5196 at 192.692 kb on + strand, within Atu5196 at 192.692 kb on + strand, within Atu5196 at 192.955 kb on - strand at 193.046 kb on - strand at 193.087 kb on - strand at 193.121 kb on - strand at 193.168 kb on + strand at 193.168 kb on + strand at 193.199 kb on + strand, within Atu5197 at 193.199 kb on + strand, within Atu5197 at 193.207 kb on - strand, within Atu5197 at 193.224 kb on + strand, within Atu5197 at 193.224 kb on + strand, within Atu5197 at 193.232 kb on - strand, within Atu5197 at 193.232 kb on - strand, within Atu5197 at 193.251 kb on + strand, within Atu5197 at 193.251 kb on - strand, within Atu5197 at 193.278 kb on - strand, within Atu5197 at 193.410 kb on + strand, within Atu5197 at 193.418 kb on - strand, within Atu5197 at 193.419 kb on - strand, within Atu5197 at 193.419 kb on - strand, within Atu5197 at 193.544 kb on + strand, within Atu5197 at 193.641 kb on - strand, within Atu5197 at 193.806 kb on + strand, within Atu5197 at 193.838 kb on - strand, within Atu5197 at 193.853 kb on - strand, within Atu5197 at 193.917 kb on - strand, within Atu5197 at 193.944 kb on - strand, within Atu5197 at 193.949 kb on - strand, within Atu5197 at 193.949 kb on - strand, within Atu5197 at 194.021 kb on - strand at 194.131 kb on - strand at 194.144 kb on + strand at 194.152 kb on - strand at 194.174 kb on + strand at 194.306 kb on - strand, within Atu5198 at 194.306 kb on - strand, within Atu5198 at 194.324 kb on + strand, within Atu5198 at 194.332 kb on - strand, within Atu5198 at 194.418 kb on - strand, within Atu5198 at 194.418 kb on - strand, within Atu5198 at 194.454 kb on - strand, within Atu5198 at 194.456 kb on + strand, within Atu5198 at 194.464 kb on - strand, within Atu5198 at 194.464 kb on - strand, within Atu5198 at 194.469 kb on + strand, within Atu5198 at 194.477 kb on - strand, within Atu5198 at 194.477 kb on - strand, within Atu5198 at 194.509 kb on + strand, within Atu5198 at 194.559 kb on - strand, within Atu5198 at 194.612 kb on + strand, within Atu5198 at 194.620 kb on - strand, within Atu5198 at 194.650 kb on + strand, within Atu5198 at 194.671 kb on + strand, within Atu5198 at 194.718 kb on + strand, within Atu5198 at 194.722 kb on - strand, within Atu5198 at 194.726 kb on - strand, within Atu5198 at 194.734 kb on + strand, within Atu5198 at 194.734 kb on + strand, within Atu5198 at 194.741 kb on - strand, within Atu5198 at 194.741 kb on - strand, within Atu5198 at 194.741 kb on - strand, within Atu5198 at 194.742 kb on - strand, within Atu5198 at 194.742 kb on - strand, within Atu5198 at 194.802 kb on + strand, within Atu5198 at 194.850 kb on - strand, within Atu5198 at 194.873 kb on - strand, within Atu5198 at 194.915 kb on + strand, within Atu5198 at 194.940 kb on + strand, within Atu5198 at 194.940 kb on + strand, within Atu5198 at 194.940 kb on + strand, within Atu5198 at 194.940 kb on + strand, within Atu5198 at 194.940 kb on + strand, within Atu5198 at 194.948 kb on - strand, within Atu5198 at 194.948 kb on - strand, within Atu5198 at 194.948 kb on - strand, within Atu5198 at 194.948 kb on - strand, within Atu5198 at 194.948 kb on - strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.963 kb on + strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198 at 194.971 kb on - strand, within Atu5198
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 192,145 + +0.2 192,160 + -0.3 192,168 - -1.3 192,168 - +0.1 192,170 + +2.2 192,268 + -2.1 192,361 - -1.5 192,372 + -1.6 192,389 - Atu5196 0.12 +3.0 192,389 - Atu5196 0.12 +0.6 192,389 - Atu5196 0.12 -2.1 192,389 - Atu5196 0.12 -1.9 192,401 + Atu5196 0.14 +1.2 192,410 + Atu5196 0.15 +0.1 192,410 + Atu5196 0.15 +0.1 192,414 - Atu5196 0.16 +1.7 192,417 + Atu5196 0.16 +0.2 192,544 - Atu5196 0.34 -1.4 192,692 + Atu5196 0.55 -2.8 192,692 + Atu5196 0.55 -1.6 192,955 - -2.3 193,046 - +2.3 193,087 - +0.1 193,121 - -1.4 193,168 + -1.9 193,168 + +0.4 193,199 + Atu5197 0.12 -0.4 193,199 + Atu5197 0.12 -2.3 193,207 - Atu5197 0.13 -2.6 193,224 + Atu5197 0.15 -0.4 193,224 + Atu5197 0.15 -2.4 193,232 - Atu5197 0.16 +0.1 193,232 - Atu5197 0.16 +0.2 193,251 + Atu5197 0.18 +0.6 193,251 - Atu5197 0.18 -1.2 193,278 - Atu5197 0.20 +0.4 193,410 + Atu5197 0.34 +0.1 193,418 - Atu5197 0.35 -4.4 193,419 - Atu5197 0.35 -0.5 193,419 - Atu5197 0.35 -1.7 193,544 + Atu5197 0.48 +0.6 193,641 - Atu5197 0.58 -0.6 193,806 + Atu5197 0.74 -0.1 193,838 - Atu5197 0.78 +0.8 193,853 - Atu5197 0.79 -3.6 193,917 - Atu5197 0.86 +2.1 193,944 - Atu5197 0.89 +0.6 193,949 - Atu5197 0.89 -1.6 193,949 - Atu5197 0.89 +0.1 194,021 - -0.8 194,131 - -1.4 194,144 + -0.0 194,152 - +0.6 194,174 + +1.7 194,306 - Atu5198 0.22 -1.0 194,306 - Atu5198 0.22 -0.5 194,324 + Atu5198 0.23 -1.8 194,332 - Atu5198 0.24 -0.1 194,418 - Atu5198 0.33 -1.9 194,418 - Atu5198 0.33 +0.0 194,454 - Atu5198 0.36 -0.6 194,456 + Atu5198 0.36 -0.0 194,464 - Atu5198 0.37 +0.5 194,464 - Atu5198 0.37 +0.3 194,469 + Atu5198 0.38 -2.9 194,477 - Atu5198 0.38 +1.9 194,477 - Atu5198 0.38 -0.7 194,509 + Atu5198 0.42 -0.2 194,559 - Atu5198 0.47 -2.3 194,612 + Atu5198 0.52 +0.7 194,620 - Atu5198 0.53 -1.2 194,650 + Atu5198 0.55 -2.5 194,671 + Atu5198 0.58 -1.9 194,718 + Atu5198 0.62 +3.2 194,722 - Atu5198 0.63 -0.3 194,726 - Atu5198 0.63 -1.1 194,734 + Atu5198 0.64 -0.5 194,734 + Atu5198 0.64 +0.6 194,741 - Atu5198 0.64 -0.0 194,741 - Atu5198 0.64 +0.7 194,741 - Atu5198 0.64 +0.8 194,742 - Atu5198 0.65 -2.7 194,742 - Atu5198 0.65 -0.9 194,802 + Atu5198 0.70 +0.1 194,850 - Atu5198 0.75 -0.3 194,873 - Atu5198 0.77 -0.4 194,915 + Atu5198 0.82 +3.0 194,940 + Atu5198 0.84 -0.2 194,940 + Atu5198 0.84 -0.0 194,940 + Atu5198 0.84 +2.3 194,940 + Atu5198 0.84 -0.3 194,940 + Atu5198 0.84 +2.4 194,948 - Atu5198 0.85 +0.2 194,948 - Atu5198 0.85 -0.6 194,948 - Atu5198 0.85 -0.0 194,948 - Atu5198 0.85 -1.1 194,948 - Atu5198 0.85 -0.5 194,963 + Atu5198 0.86 +0.5 194,963 + Atu5198 0.86 -0.3 194,963 + Atu5198 0.86 -0.3 194,963 + Atu5198 0.86 -0.1 194,963 + Atu5198 0.86 -0.3 194,963 + Atu5198 0.86 +0.3 194,963 + Atu5198 0.86 +0.0 194,971 - Atu5198 0.87 -0.6 194,971 - Atu5198 0.87 -0.1 194,971 - Atu5198 0.87 -0.7 194,971 - Atu5198 0.87 +0.3 194,971 - Atu5198 0.87 -0.5 194,971 - Atu5198 0.87 -0.6 194,971 - Atu5198 0.87 -0.8 194,971 - Atu5198 0.87 -1.4 194,971 - Atu5198 0.87 +0.2
Or see this region's nucleotide sequence