Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3886 and Atu3887 are separated by 379 nucleotides Atu3887 and Atu3888 are separated by 62 nucleotides Atu3888 and Atu3889 are separated by 98 nucleotides Atu3889 and Atu3890 are separated by 6 nucleotides
Atu3886: Atu3886 - lysophospholipase, at 980,660 to 981,601
Atu3886
Atu3887: Atu3887 - small heat shock protein, at 981,981 to 982,463
Atu3887
Atu3888: Atu3888 - hypothetical protein, at 982,526 to 983,545
Atu3888
Atu3889: Atu3889 - LysR family transcriptional regulator, at 983,644 to 984,504
Atu3889
Atu3890: Atu3890 - glycerol kinase, at 984,511 to 986,010
Atu3890
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 981.544 kb on - strand at 981.569 kb on + strand at 981.577 kb on - strand at 981.644 kb on - strand at 981.770 kb on + strand at 981.857 kb on - strand at 981.860 kb on + strand at 981.891 kb on + strand at 981.904 kb on - strand at 981.979 kb on - strand at 982.076 kb on - strand, within Atu3887 at 982.082 kb on - strand, within Atu3887 at 982.099 kb on - strand, within Atu3887 at 982.156 kb on + strand, within Atu3887 at 982.372 kb on + strand, within Atu3887 at 982.372 kb on + strand, within Atu3887 at 982.457 kb on + strand at 982.527 kb on - strand at 982.610 kb on + strand at 982.649 kb on + strand, within Atu3888 at 982.775 kb on - strand, within Atu3888 at 982.833 kb on + strand, within Atu3888 at 982.895 kb on - strand, within Atu3888 at 982.923 kb on + strand, within Atu3888 at 982.959 kb on + strand, within Atu3888 at 983.021 kb on + strand, within Atu3888 at 983.022 kb on + strand, within Atu3888 at 983.070 kb on - strand, within Atu3888 at 983.123 kb on - strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.192 kb on + strand, within Atu3888 at 983.212 kb on + strand, within Atu3888 at 983.212 kb on + strand, within Atu3888 at 983.215 kb on - strand, within Atu3888 at 983.317 kb on + strand, within Atu3888 at 983.325 kb on - strand, within Atu3888 at 983.357 kb on + strand, within Atu3888 at 983.540 kb on + strand at 983.728 kb on + strand at 983.728 kb on + strand at 983.760 kb on + strand, within Atu3889 at 983.806 kb on - strand, within Atu3889 at 983.835 kb on - strand, within Atu3889 at 983.836 kb on + strand, within Atu3889 at 983.916 kb on + strand, within Atu3889 at 983.921 kb on + strand, within Atu3889 at 983.924 kb on - strand, within Atu3889 at 983.924 kb on - strand, within Atu3889 at 983.929 kb on - strand, within Atu3889 at 983.929 kb on - strand, within Atu3889 at 984.002 kb on + strand, within Atu3889 at 984.010 kb on - strand, within Atu3889 at 984.016 kb on + strand, within Atu3889 at 984.024 kb on - strand, within Atu3889 at 984.024 kb on - strand, within Atu3889 at 984.046 kb on - strand, within Atu3889 at 984.110 kb on - strand, within Atu3889 at 984.146 kb on + strand, within Atu3889 at 984.191 kb on + strand, within Atu3889 at 984.237 kb on + strand, within Atu3889 at 984.247 kb on + strand, within Atu3889 at 984.428 kb on - strand at 984.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 981,544 - +1.2 981,569 + -0.5 981,577 - -1.6 981,644 - +0.2 981,770 + -0.3 981,857 - -0.4 981,860 + -0.8 981,891 + +0.7 981,904 - +0.4 981,979 - -0.3 982,076 - Atu3887 0.20 +1.0 982,082 - Atu3887 0.21 +1.1 982,099 - Atu3887 0.24 +0.3 982,156 + Atu3887 0.36 +0.8 982,372 + Atu3887 0.81 -0.8 982,372 + Atu3887 0.81 -2.8 982,457 + -2.0 982,527 - -0.6 982,610 + -0.8 982,649 + Atu3888 0.12 -0.2 982,775 - Atu3888 0.24 +0.9 982,833 + Atu3888 0.30 -0.2 982,895 - Atu3888 0.36 +1.4 982,923 + Atu3888 0.39 +0.2 982,959 + Atu3888 0.42 -2.6 983,021 + Atu3888 0.49 +0.1 983,022 + Atu3888 0.49 +0.2 983,070 - Atu3888 0.53 -1.1 983,123 - Atu3888 0.59 -0.0 983,192 + Atu3888 0.65 +1.5 983,192 + Atu3888 0.65 -0.0 983,192 + Atu3888 0.65 +0.6 983,212 + Atu3888 0.67 +1.5 983,212 + Atu3888 0.67 +1.6 983,215 - Atu3888 0.68 +0.7 983,317 + Atu3888 0.78 +0.3 983,325 - Atu3888 0.78 +0.6 983,357 + Atu3888 0.81 -0.2 983,540 + +0.3 983,728 + +0.6 983,728 + +0.8 983,760 + Atu3889 0.13 -0.2 983,806 - Atu3889 0.19 -1.9 983,835 - Atu3889 0.22 -0.4 983,836 + Atu3889 0.22 +0.3 983,916 + Atu3889 0.32 -1.4 983,921 + Atu3889 0.32 -0.2 983,924 - Atu3889 0.33 +1.7 983,924 - Atu3889 0.33 -1.2 983,929 - Atu3889 0.33 +2.1 983,929 - Atu3889 0.33 +7.2 984,002 + Atu3889 0.42 -0.6 984,010 - Atu3889 0.43 -1.9 984,016 + Atu3889 0.43 +0.5 984,024 - Atu3889 0.44 +0.2 984,024 - Atu3889 0.44 -0.4 984,046 - Atu3889 0.47 -0.2 984,110 - Atu3889 0.54 -0.2 984,146 + Atu3889 0.58 +0.6 984,191 + Atu3889 0.64 +0.8 984,237 + Atu3889 0.69 -0.1 984,247 + Atu3889 0.70 +0.2 984,428 - +0.4 984,439 + +0.2
Or see this region's nucleotide sequence