Strain Fitness in Agrobacterium fabrum C58 around Atu3824

Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3823 and Atu3824 are separated by 25 nucleotidesAtu3824 and Atu3826 are separated by 603 nucleotides Atu3823: Atu3823 - 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase, at 919,370 to 920,398 Atu3823 Atu3824: Atu3824 - hypothetical protein, at 920,424 to 921,407 Atu3824 Atu3826: Atu3826 - acyl-CoA hydrolase, at 922,011 to 922,841 Atu3826 Position (kb) 920 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 919.424 kb on - strandat 919.451 kb on - strandat 919.476 kb on + strand, within Atu3823at 919.484 kb on - strand, within Atu3823at 919.510 kb on - strand, within Atu3823at 919.519 kb on + strand, within Atu3823at 919.546 kb on + strand, within Atu3823at 919.597 kb on + strand, within Atu3823at 919.632 kb on - strand, within Atu3823at 919.682 kb on - strand, within Atu3823at 919.705 kb on + strand, within Atu3823at 919.713 kb on - strand, within Atu3823at 919.742 kb on - strand, within Atu3823at 919.821 kb on + strand, within Atu3823at 919.834 kb on - strand, within Atu3823at 919.835 kb on - strand, within Atu3823at 919.881 kb on - strand, within Atu3823at 919.978 kb on - strand, within Atu3823at 919.986 kb on - strand, within Atu3823at 920.137 kb on - strand, within Atu3823at 920.465 kb on + strandat 920.465 kb on + strandat 920.473 kb on - strandat 920.475 kb on + strandat 920.497 kb on - strandat 920.502 kb on - strandat 920.551 kb on - strand, within Atu3824at 920.553 kb on - strand, within Atu3824at 920.557 kb on + strand, within Atu3824at 920.579 kb on - strand, within Atu3824at 920.600 kb on + strand, within Atu3824at 920.673 kb on - strand, within Atu3824at 920.747 kb on + strand, within Atu3824at 920.747 kb on - strand, within Atu3824at 920.794 kb on + strand, within Atu3824at 920.802 kb on - strand, within Atu3824at 920.826 kb on + strand, within Atu3824at 920.834 kb on - strand, within Atu3824at 920.837 kb on - strand, within Atu3824at 920.943 kb on + strand, within Atu3824at 920.949 kb on - strand, within Atu3824at 921.210 kb on - strand, within Atu3824at 921.214 kb on + strand, within Atu3824at 921.214 kb on + strand, within Atu3824at 921.222 kb on - strand, within Atu3824at 921.222 kb on - strand, within Atu3824at 921.233 kb on - strand, within Atu3824at 921.271 kb on + strand, within Atu3824at 921.309 kb on - strandat 921.645 kb on + strandat 921.647 kb on + strandat 921.647 kb on + strandat 921.653 kb on - strandat 921.680 kb on + strandat 921.683 kb on - strandat 921.688 kb on - strandat 921.688 kb on - strandat 921.698 kb on - strandat 921.739 kb on + strandat 921.747 kb on - strandat 921.754 kb on - strandat 921.768 kb on + strandat 921.786 kb on + strandat 921.861 kb on + strandat 921.876 kb on - strandat 921.922 kb on + strandat 921.932 kb on - strandat 921.948 kb on + strandat 921.956 kb on - strandat 921.962 kb on - strandat 921.974 kb on + strandat 921.995 kb on + strandat 922.003 kb on - strandat 922.003 kb on - strandat 922.003 kb on - strandat 922.027 kb on - strandat 922.105 kb on - strand, within Atu3826at 922.110 kb on + strand, within Atu3826at 922.120 kb on + strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.134 kb on - strand, within Atu3826at 922.182 kb on + strand, within Atu3826at 922.184 kb on + strand, within Atu3826at 922.265 kb on + strand, within Atu3826at 922.273 kb on - strand, within Atu3826at 922.342 kb on + strand, within Atu3826at 922.345 kb on - strand, within Atu3826at 922.350 kb on - strand, within Atu3826at 922.360 kb on + strand, within Atu3826

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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919,424 - -1.2
919,451 - -3.0
919,476 + Atu3823 0.10 +1.2
919,484 - Atu3823 0.11 +0.3
919,510 - Atu3823 0.14 +0.2
919,519 + Atu3823 0.14 +0.3
919,546 + Atu3823 0.17 +0.1
919,597 + Atu3823 0.22 -1.8
919,632 - Atu3823 0.25 +1.1
919,682 - Atu3823 0.30 -0.1
919,705 + Atu3823 0.33 +0.4
919,713 - Atu3823 0.33 +0.2
919,742 - Atu3823 0.36 -0.0
919,821 + Atu3823 0.44 -0.8
919,834 - Atu3823 0.45 -0.4
919,835 - Atu3823 0.45 +0.8
919,881 - Atu3823 0.50 +0.4
919,978 - Atu3823 0.59 -2.1
919,986 - Atu3823 0.60 +1.8
920,137 - Atu3823 0.75 +0.8
920,465 + +0.6
920,465 + -0.0
920,473 - -1.3
920,475 + +0.7
920,497 - -1.7
920,502 - -0.8
920,551 - Atu3824 0.13 +1.2
920,553 - Atu3824 0.13 +0.7
920,557 + Atu3824 0.14 -1.0
920,579 - Atu3824 0.16 +0.4
920,600 + Atu3824 0.18 +1.0
920,673 - Atu3824 0.25 -0.4
920,747 + Atu3824 0.33 -0.5
920,747 - Atu3824 0.33 +1.3
920,794 + Atu3824 0.38 +1.4
920,802 - Atu3824 0.38 +0.9
920,826 + Atu3824 0.41 +1.1
920,834 - Atu3824 0.42 -0.4
920,837 - Atu3824 0.42 -1.2
920,943 + Atu3824 0.53 -1.8
920,949 - Atu3824 0.53 -2.1
921,210 - Atu3824 0.80 +2.8
921,214 + Atu3824 0.80 +1.6
921,214 + Atu3824 0.80 -0.1
921,222 - Atu3824 0.81 +0.3
921,222 - Atu3824 0.81 +1.1
921,233 - Atu3824 0.82 +1.6
921,271 + Atu3824 0.86 -1.3
921,309 - -3.3
921,645 + +1.8
921,647 + -0.7
921,647 + -2.5
921,653 - +0.1
921,680 + -0.1
921,683 - +1.5
921,688 - +1.0
921,688 - -0.7
921,698 - -0.6
921,739 + +1.0
921,747 - +0.8
921,754 - +1.5
921,768 + +0.0
921,786 + +2.4
921,861 + -2.3
921,876 - +1.0
921,922 + +0.2
921,932 - -0.5
921,948 + -1.2
921,956 - -0.6
921,962 - -0.6
921,974 + +0.4
921,995 + -0.5
922,003 - -0.5
922,003 - -0.2
922,003 - -1.2
922,027 - -1.5
922,105 - Atu3826 0.11 -0.0
922,110 + Atu3826 0.12 +1.1
922,120 + Atu3826 0.13 +0.4
922,134 - Atu3826 0.15 +0.8
922,134 - Atu3826 0.15 -0.2
922,134 - Atu3826 0.15 +0.6
922,134 - Atu3826 0.15 +0.3
922,182 + Atu3826 0.21 -2.1
922,184 + Atu3826 0.21 -0.1
922,265 + Atu3826 0.31 -0.9
922,273 - Atu3826 0.32 -0.9
922,342 + Atu3826 0.40 +1.4
922,345 - Atu3826 0.40 +0.2
922,350 - Atu3826 0.41 +1.8
922,360 + Atu3826 0.42 -2.1

Or see this region's nucleotide sequence