Strain Fitness in Agrobacterium fabrum C58 around Atu3580

Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3578 and Atu3579 are separated by 167 nucleotidesAtu3579 and Atu3580 are separated by 13 nucleotidesAtu3580 and Atu3581 are separated by 126 nucleotides Atu3578: Atu3578 - glycerol-3-phosphate dehydrogenase, at 632,366 to 633,913 Atu3578 Atu3579: Atu3579 - lactoylglutathione lyase, at 634,081 to 634,497 Atu3579 Atu3580: Atu3580 - methylmalonyl-CoA mutase, at 634,511 to 636,652 Atu3580 Atu3581: Atu3581 - propionyl-coenzyme A carboxylase, alpha polypeptide, at 636,779 to 638,782 Atu3581 Position (kb) 634 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 633.534 kb on - strand, within Atu3578at 633.618 kb on + strand, within Atu3578at 633.750 kb on + strand, within Atu3578at 633.919 kb on - strandat 634.054 kb on + strandat 634.054 kb on + strandat 634.261 kb on + strand, within Atu3579at 634.261 kb on + strand, within Atu3579at 634.269 kb on - strand, within Atu3579at 634.361 kb on + strand, within Atu3579at 634.404 kb on - strand, within Atu3579at 634.464 kb on + strandat 634.464 kb on + strandat 634.509 kb on - strandat 634.530 kb on + strandat 634.549 kb on + strandat 634.549 kb on - strandat 634.611 kb on + strandat 634.750 kb on + strand, within Atu3580at 634.763 kb on - strand, within Atu3580at 634.768 kb on - strand, within Atu3580at 634.768 kb on - strand, within Atu3580at 634.794 kb on + strand, within Atu3580at 634.802 kb on - strand, within Atu3580at 634.802 kb on - strand, within Atu3580at 634.802 kb on - strand, within Atu3580at 634.814 kb on - strand, within Atu3580at 634.993 kb on + strand, within Atu3580at 635.207 kb on + strand, within Atu3580at 635.250 kb on + strand, within Atu3580at 635.307 kb on + strand, within Atu3580at 635.307 kb on + strand, within Atu3580at 635.312 kb on + strand, within Atu3580at 635.434 kb on - strand, within Atu3580at 635.451 kb on - strand, within Atu3580at 635.651 kb on - strand, within Atu3580at 635.698 kb on + strand, within Atu3580at 635.736 kb on + strand, within Atu3580at 635.754 kb on - strand, within Atu3580at 635.754 kb on - strand, within Atu3580at 635.864 kb on - strand, within Atu3580at 635.908 kb on + strand, within Atu3580at 635.909 kb on + strand, within Atu3580at 635.909 kb on + strand, within Atu3580at 636.060 kb on - strand, within Atu3580at 636.136 kb on - strand, within Atu3580at 636.199 kb on - strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.440 kb on - strandat 636.440 kb on - strandat 636.440 kb on - strandat 636.497 kb on + strandat 636.534 kb on + strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.559 kb on + strandat 636.559 kb on + strandat 636.565 kb on - strandat 636.626 kb on + strandat 636.669 kb on - strandat 636.806 kb on - strandat 636.808 kb on + strandat 636.816 kb on - strandat 636.816 kb on - strandat 636.826 kb on + strandat 636.898 kb on - strandat 636.972 kb on + strandat 636.975 kb on - strandat 636.993 kb on - strand, within Atu3581at 637.030 kb on + strand, within Atu3581at 637.030 kb on + strand, within Atu3581at 637.072 kb on + strand, within Atu3581at 637.165 kb on - strand, within Atu3581at 637.187 kb on + strand, within Atu3581at 637.195 kb on - strand, within Atu3581at 637.291 kb on - strand, within Atu3581at 637.531 kb on + strand, within Atu3581at 637.618 kb on - strand, within Atu3581

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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633,534 - Atu3578 0.75 -1.7
633,618 + Atu3578 0.81 -1.3
633,750 + Atu3578 0.89 +1.2
633,919 - +0.4
634,054 + -0.4
634,054 + -0.5
634,261 + Atu3579 0.43 -0.1
634,261 + Atu3579 0.43 +5.3
634,269 - Atu3579 0.45 -0.6
634,361 + Atu3579 0.67 -2.5
634,404 - Atu3579 0.77 +0.2
634,464 + -0.2
634,464 + +0.1
634,509 - +0.4
634,530 + -2.1
634,549 + +0.5
634,549 - -0.3
634,611 + +2.2
634,750 + Atu3580 0.11 +1.2
634,763 - Atu3580 0.12 +0.9
634,768 - Atu3580 0.12 -0.8
634,768 - Atu3580 0.12 -0.5
634,794 + Atu3580 0.13 +1.4
634,802 - Atu3580 0.14 -0.4
634,802 - Atu3580 0.14 +0.0
634,802 - Atu3580 0.14 +0.5
634,814 - Atu3580 0.14 +1.2
634,993 + Atu3580 0.23 +1.0
635,207 + Atu3580 0.32 -0.8
635,250 + Atu3580 0.35 +0.2
635,307 + Atu3580 0.37 +1.0
635,307 + Atu3580 0.37 -0.8
635,312 + Atu3580 0.37 +1.9
635,434 - Atu3580 0.43 -0.1
635,451 - Atu3580 0.44 -0.1
635,651 - Atu3580 0.53 -0.7
635,698 + Atu3580 0.55 +0.1
635,736 + Atu3580 0.57 -0.2
635,754 - Atu3580 0.58 -0.1
635,754 - Atu3580 0.58 -0.0
635,864 - Atu3580 0.63 -1.8
635,908 + Atu3580 0.65 -0.4
635,909 + Atu3580 0.65 -0.1
635,909 + Atu3580 0.65 -2.2
636,060 - Atu3580 0.72 -1.5
636,136 - Atu3580 0.76 -0.3
636,199 - Atu3580 0.79 -0.5
636,432 + Atu3580 0.90 -0.3
636,432 + Atu3580 0.90 +1.1
636,432 + Atu3580 0.90 +1.1
636,432 + Atu3580 0.90 -0.5
636,432 + Atu3580 0.90 -1.5
636,432 + Atu3580 0.90 +1.7
636,432 + Atu3580 0.90 +0.3
636,432 + Atu3580 0.90 -0.7
636,432 + Atu3580 0.90 +0.5
636,432 + Atu3580 0.90 -0.7
636,440 - +0.6
636,440 - -1.3
636,440 - +0.0
636,497 + -1.6
636,534 + -0.2
636,542 - -0.3
636,542 - +0.3
636,559 + +0.4
636,559 + -2.0
636,565 - +0.1
636,626 + -2.3
636,669 - -0.3
636,806 - -1.2
636,808 + -0.2
636,816 - -0.6
636,816 - -1.2
636,826 + +0.7
636,898 - +0.4
636,972 + -0.7
636,975 - +0.1
636,993 - Atu3581 0.11 -0.6
637,030 + Atu3581 0.13 +0.7
637,030 + Atu3581 0.13 -3.3
637,072 + Atu3581 0.15 -1.4
637,165 - Atu3581 0.19 -0.4
637,187 + Atu3581 0.20 -0.0
637,195 - Atu3581 0.21 -1.1
637,291 - Atu3581 0.26 -0.9
637,531 + Atu3581 0.38 +0.9
637,618 - Atu3581 0.42 -1.1

Or see this region's nucleotide sequence