Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3273 and Atu3274 overlap by 4 nucleotides Atu3274 and Atu3275 overlap by 4 nucleotides Atu3275 and Atu3276 overlap by 1 nucleotides
Atu3273: Atu3273 - HlyD family secretion protein, at 293,317 to 294,594
Atu3273
Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731
Atu3274
Atu3275: Atu3275 - invasion associated protein B, at 297,728 to 298,306
Atu3275
Atu3276: Atu3276 - hypothetical protein, at 298,306 to 302,331
Atu3276
Position (kb) 294
295
296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 293.608 kb on - strand, within Atu3273 at 293.611 kb on - strand, within Atu3273 at 293.638 kb on + strand, within Atu3273 at 293.645 kb on - strand, within Atu3273 at 293.736 kb on - strand, within Atu3273 at 293.754 kb on + strand, within Atu3273 at 293.756 kb on - strand, within Atu3273 at 293.756 kb on - strand, within Atu3273 at 293.762 kb on - strand, within Atu3273 at 293.780 kb on + strand, within Atu3273 at 293.790 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.862 kb on + strand, within Atu3273 at 293.865 kb on - strand, within Atu3273 at 293.865 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.870 kb on - strand, within Atu3273 at 293.921 kb on + strand, within Atu3273 at 293.926 kb on + strand, within Atu3273 at 293.926 kb on + strand, within Atu3273 at 293.936 kb on + strand, within Atu3273 at 294.002 kb on + strand, within Atu3273 at 294.065 kb on + strand, within Atu3273 at 294.065 kb on + strand, within Atu3273 at 294.153 kb on + strand, within Atu3273 at 294.198 kb on + strand, within Atu3273 at 294.207 kb on - strand, within Atu3273 at 294.282 kb on - strand, within Atu3273 at 294.377 kb on - strand, within Atu3273 at 294.384 kb on - strand, within Atu3273 at 294.489 kb on - strand at 294.670 kb on + strand at 294.683 kb on + strand at 294.696 kb on - strand at 294.786 kb on - strand at 294.805 kb on - strand at 294.814 kb on + strand at 294.964 kb on + strand, within Atu3274 at 295.002 kb on + strand, within Atu3274 at 295.053 kb on - strand, within Atu3274 at 295.102 kb on + strand, within Atu3274 at 295.123 kb on - strand, within Atu3274 at 295.123 kb on - strand, within Atu3274 at 295.130 kb on + strand, within Atu3274 at 295.130 kb on + strand, within Atu3274 at 295.138 kb on - strand, within Atu3274 at 295.138 kb on - strand, within Atu3274 at 295.138 kb on - strand, within Atu3274 at 295.159 kb on - strand, within Atu3274 at 295.166 kb on + strand, within Atu3274 at 295.194 kb on - strand, within Atu3274 at 295.244 kb on + strand, within Atu3274 at 295.292 kb on + strand, within Atu3274 at 295.335 kb on - strand, within Atu3274 at 295.426 kb on + strand, within Atu3274 at 295.601 kb on + strand, within Atu3274 at 295.689 kb on + strand, within Atu3274 at 295.723 kb on - strand, within Atu3274 at 295.730 kb on - strand, within Atu3274 at 295.857 kb on + strand, within Atu3274 at 295.857 kb on + strand, within Atu3274 at 295.865 kb on - strand, within Atu3274 at 295.895 kb on + strand, within Atu3274 at 295.898 kb on - strand, within Atu3274 at 296.010 kb on + strand, within Atu3274 at 296.020 kb on + strand, within Atu3274 at 296.047 kb on - strand, within Atu3274 at 296.052 kb on - strand, within Atu3274 at 296.124 kb on - strand, within Atu3274 at 296.213 kb on + strand, within Atu3274 at 296.213 kb on + strand, within Atu3274 at 296.412 kb on + strand, within Atu3274 at 296.442 kb on - strand, within Atu3274 at 296.469 kb on - strand, within Atu3274 at 296.469 kb on - strand, within Atu3274 at 296.638 kb on - strand, within Atu3274 at 296.651 kb on - strand, within Atu3274 at 296.657 kb on + strand, within Atu3274 at 296.679 kb on + strand, within Atu3274 at 296.714 kb on - strand, within Atu3274 at 296.767 kb on - strand, within Atu3274 at 296.913 kb on + strand, within Atu3274 at 296.913 kb on + strand, within Atu3274 at 296.948 kb on - strand, within Atu3274 at 296.990 kb on - strand, within Atu3274 at 297.015 kb on - strand, within Atu3274 at 297.025 kb on - strand, within Atu3274 at 297.052 kb on + strand, within Atu3274 at 297.070 kb on - strand, within Atu3274 at 297.070 kb on - strand, within Atu3274 at 297.130 kb on + strand, within Atu3274 at 297.340 kb on - strand, within Atu3274 at 297.383 kb on - strand, within Atu3274 at 297.494 kb on - strand at 297.517 kb on + strand at 297.517 kb on + strand at 297.597 kb on + strand at 297.640 kb on - strand at 297.671 kb on + strand at 297.676 kb on + strand at 297.801 kb on - strand, within Atu3275 at 297.832 kb on - strand, within Atu3275 at 297.880 kb on + strand, within Atu3275 at 297.901 kb on + strand, within Atu3275 at 297.906 kb on + strand, within Atu3275 at 297.914 kb on - strand, within Atu3275 at 297.919 kb on - strand, within Atu3275 at 297.956 kb on - strand, within Atu3275 at 298.005 kb on - strand, within Atu3275 at 298.005 kb on - strand, within Atu3275 at 298.082 kb on - strand, within Atu3275 at 298.174 kb on - strand, within Atu3275 at 298.242 kb on - strand, within Atu3275 at 298.337 kb on + strand at 298.404 kb on + strand at 298.406 kb on + strand at 298.424 kb on - strand at 298.454 kb on - strand at 298.504 kb on - strand at 298.529 kb on + strand at 298.626 kb on + strand at 298.665 kb on + strand at 298.698 kb on - strand at 298.724 kb on - strand, within Atu3276
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 293,608 - Atu3273 0.23 -0.4 293,611 - Atu3273 0.23 -0.3 293,638 + Atu3273 0.25 +0.9 293,645 - Atu3273 0.26 +0.9 293,736 - Atu3273 0.33 +1.8 293,754 + Atu3273 0.34 -0.4 293,756 - Atu3273 0.34 -0.7 293,756 - Atu3273 0.34 -1.4 293,762 - Atu3273 0.35 -2.7 293,780 + Atu3273 0.36 +0.2 293,790 + Atu3273 0.37 +1.2 293,862 + Atu3273 0.43 -1.2 293,862 + Atu3273 0.43 +1.3 293,862 + Atu3273 0.43 +0.2 293,862 + Atu3273 0.43 -0.8 293,862 + Atu3273 0.43 +1.2 293,862 + Atu3273 0.43 +1.1 293,862 + Atu3273 0.43 -0.7 293,862 + Atu3273 0.43 +0.4 293,862 + Atu3273 0.43 -0.2 293,865 - Atu3273 0.43 -0.6 293,865 - Atu3273 0.43 +1.4 293,870 - Atu3273 0.43 +1.2 293,870 - Atu3273 0.43 +1.4 293,870 - Atu3273 0.43 +0.9 293,870 - Atu3273 0.43 +0.9 293,870 - Atu3273 0.43 +1.6 293,921 + Atu3273 0.47 +0.9 293,926 + Atu3273 0.48 +1.2 293,926 + Atu3273 0.48 +0.6 293,936 + Atu3273 0.48 -0.1 294,002 + Atu3273 0.54 -2.1 294,065 + Atu3273 0.59 +2.4 294,065 + Atu3273 0.59 +0.6 294,153 + Atu3273 0.65 +0.5 294,198 + Atu3273 0.69 +1.7 294,207 - Atu3273 0.70 -1.1 294,282 - Atu3273 0.76 +0.0 294,377 - Atu3273 0.83 +0.3 294,384 - Atu3273 0.83 -0.2 294,489 - +0.7 294,670 + -0.7 294,683 + +0.4 294,696 - +0.6 294,786 - +0.4 294,805 - -1.3 294,814 + -2.6 294,964 + Atu3274 0.12 -0.2 295,002 + Atu3274 0.13 +0.1 295,053 - Atu3274 0.15 +0.9 295,102 + Atu3274 0.16 +1.2 295,123 - Atu3274 0.17 +0.2 295,123 - Atu3274 0.17 +1.3 295,130 + Atu3274 0.17 +0.4 295,130 + Atu3274 0.17 +1.2 295,138 - Atu3274 0.17 -1.3 295,138 - Atu3274 0.17 -0.6 295,138 - Atu3274 0.17 +0.8 295,159 - Atu3274 0.18 +0.3 295,166 + Atu3274 0.18 +0.8 295,194 - Atu3274 0.19 -0.2 295,244 + Atu3274 0.21 -0.0 295,292 + Atu3274 0.22 +0.3 295,335 - Atu3274 0.24 -0.4 295,426 + Atu3274 0.27 +0.6 295,601 + Atu3274 0.32 +1.8 295,689 + Atu3274 0.35 +2.1 295,723 - Atu3274 0.36 -0.0 295,730 - Atu3274 0.36 +2.0 295,857 + Atu3274 0.40 +0.7 295,857 + Atu3274 0.40 +1.1 295,865 - Atu3274 0.41 -0.2 295,895 + Atu3274 0.42 +0.0 295,898 - Atu3274 0.42 -1.6 296,010 + Atu3274 0.45 +0.3 296,020 + Atu3274 0.45 -0.6 296,047 - Atu3274 0.46 +0.4 296,052 - Atu3274 0.47 +0.3 296,124 - Atu3274 0.49 -2.0 296,213 + Atu3274 0.52 +1.2 296,213 + Atu3274 0.52 +0.3 296,412 + Atu3274 0.58 +0.6 296,442 - Atu3274 0.59 -0.6 296,469 - Atu3274 0.60 +0.3 296,469 - Atu3274 0.60 +0.6 296,638 - Atu3274 0.65 +0.5 296,651 - Atu3274 0.66 -1.9 296,657 + Atu3274 0.66 -0.5 296,679 + Atu3274 0.66 +0.5 296,714 - Atu3274 0.68 +2.3 296,767 - Atu3274 0.69 +1.3 296,913 + Atu3274 0.74 +0.6 296,913 + Atu3274 0.74 +0.6 296,948 - Atu3274 0.75 +1.0 296,990 - Atu3274 0.76 +0.7 297,015 - Atu3274 0.77 -0.1 297,025 - Atu3274 0.77 +0.0 297,052 + Atu3274 0.78 +0.3 297,070 - Atu3274 0.79 -1.9 297,070 - Atu3274 0.79 +0.6 297,130 + Atu3274 0.81 +0.5 297,340 - Atu3274 0.88 -0.0 297,383 - Atu3274 0.89 -2.2 297,494 - -2.5 297,517 + +2.1 297,517 + +1.5 297,597 + +0.1 297,640 - +1.4 297,671 + -0.7 297,676 + +0.4 297,801 - Atu3275 0.13 -3.1 297,832 - Atu3275 0.18 +0.7 297,880 + Atu3275 0.26 +3.4 297,901 + Atu3275 0.30 -0.4 297,906 + Atu3275 0.31 +0.1 297,914 - Atu3275 0.32 +1.7 297,919 - Atu3275 0.33 +1.2 297,956 - Atu3275 0.39 +1.2 298,005 - Atu3275 0.48 +2.2 298,005 - Atu3275 0.48 +2.1 298,082 - Atu3275 0.61 +0.8 298,174 - Atu3275 0.77 -1.1 298,242 - Atu3275 0.89 -0.3 298,337 + +1.3 298,404 + -0.4 298,406 + -0.2 298,424 - +0.4 298,454 - -3.0 298,504 - +2.1 298,529 + +0.3 298,626 + -0.9 298,665 + -0.0 298,698 - -2.4 298,724 - Atu3276 0.10 -0.7
Or see this region's nucleotide sequence