Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0899 and Atu0900 are separated by 41 nucleotides Atu0900 and Atu0901 are separated by 149 nucleotides Atu0901 and Atu0902 are separated by 310 nucleotides
Atu0899: Atu0899 - dihydrodipicolinate synthase, at 890,200 to 891,108
Atu0899
Atu0900: Atu0900 - hypothetical protein, at 891,150 to 891,896
Atu0900
Atu0901: Atu0901 - 6-O-methylguanine-DNA methyltransferase, at 892,046 to 893,182
Atu0901
Atu0902: Atu0902 - hypothetical protein, at 893,493 to 894,653
Atu0902
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.059 kb on + strand at 891.138 kb on + strand at 891.138 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.146 kb on - strand at 891.154 kb on - strand at 891.156 kb on - strand at 891.156 kb on - strand at 891.236 kb on + strand, within Atu0900 at 891.285 kb on - strand, within Atu0900 at 891.292 kb on - strand, within Atu0900 at 891.309 kb on - strand, within Atu0900 at 891.325 kb on - strand, within Atu0900 at 891.383 kb on - strand, within Atu0900 at 891.436 kb on + strand, within Atu0900 at 891.436 kb on + strand, within Atu0900 at 891.612 kb on - strand, within Atu0900 at 891.621 kb on + strand, within Atu0900 at 891.715 kb on + strand, within Atu0900 at 891.715 kb on + strand, within Atu0900 at 891.723 kb on - strand, within Atu0900 at 891.723 kb on - strand, within Atu0900 at 891.790 kb on + strand, within Atu0900 at 891.798 kb on - strand, within Atu0900 at 891.798 kb on - strand, within Atu0900 at 891.812 kb on + strand, within Atu0900 at 891.820 kb on - strand, within Atu0900 at 891.867 kb on + strand at 891.875 kb on - strand at 891.915 kb on - strand at 891.974 kb on + strand at 891.996 kb on - strand at 892.025 kb on - strand at 892.100 kb on + strand at 892.120 kb on - strand at 892.169 kb on + strand, within Atu0901 at 892.169 kb on + strand, within Atu0901 at 892.175 kb on + strand, within Atu0901 at 892.175 kb on + strand, within Atu0901 at 892.175 kb on + strand, within Atu0901 at 892.175 kb on + strand, within Atu0901 at 892.175 kb on + strand, within Atu0901 at 892.183 kb on - strand, within Atu0901 at 892.298 kb on - strand, within Atu0901 at 892.332 kb on - strand, within Atu0901 at 892.332 kb on - strand, within Atu0901 at 892.350 kb on + strand, within Atu0901 at 892.390 kb on + strand, within Atu0901 at 892.449 kb on + strand, within Atu0901 at 892.636 kb on + strand, within Atu0901 at 892.644 kb on - strand, within Atu0901 at 892.772 kb on + strand, within Atu0901 at 892.793 kb on + strand, within Atu0901 at 892.793 kb on + strand, within Atu0901 at 892.827 kb on + strand, within Atu0901 at 892.986 kb on + strand, within Atu0901 at 893.060 kb on - strand, within Atu0901 at 893.075 kb on - strand at 893.087 kb on + strand at 893.089 kb on + strand at 893.095 kb on - strand at 893.095 kb on - strand at 893.134 kb on + strand at 893.155 kb on + strand at 893.230 kb on + strand at 893.258 kb on - strand at 893.312 kb on + strand at 893.313 kb on + strand at 893.387 kb on + strand at 893.743 kb on + strand, within Atu0902 at 893.888 kb on + strand, within Atu0902 at 893.890 kb on + strand, within Atu0902 at 893.913 kb on - strand, within Atu0902 at 893.915 kb on + strand, within Atu0902 at 893.966 kb on + strand, within Atu0902 at 894.004 kb on + strand, within Atu0902 at 894.009 kb on + strand, within Atu0902 at 894.026 kb on + strand, within Atu0902 at 894.048 kb on + strand, within Atu0902 at 894.056 kb on - strand, within Atu0902
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 891,059 + +0.4 891,138 + -0.1 891,138 + +0.5 891,146 + +0.2 891,146 + -0.2 891,146 + -0.9 891,146 + +1.5 891,146 - -0.1 891,154 - +1.0 891,156 - +0.9 891,156 - -0.7 891,236 + Atu0900 0.12 +0.4 891,285 - Atu0900 0.18 +0.2 891,292 - Atu0900 0.19 +2.1 891,309 - Atu0900 0.21 +0.2 891,325 - Atu0900 0.23 +1.3 891,383 - Atu0900 0.31 +0.2 891,436 + Atu0900 0.38 +0.7 891,436 + Atu0900 0.38 +1.0 891,612 - Atu0900 0.62 -2.4 891,621 + Atu0900 0.63 +1.1 891,715 + Atu0900 0.76 +1.4 891,715 + Atu0900 0.76 +0.2 891,723 - Atu0900 0.77 +2.0 891,723 - Atu0900 0.77 -1.7 891,790 + Atu0900 0.86 -0.1 891,798 - Atu0900 0.87 +0.3 891,798 - Atu0900 0.87 -0.1 891,812 + Atu0900 0.89 -0.7 891,820 - Atu0900 0.90 -0.1 891,867 + +0.8 891,875 - +0.2 891,915 - +0.5 891,974 + -0.3 891,996 - -0.9 892,025 - +0.1 892,100 + -0.0 892,120 - +0.6 892,169 + Atu0901 0.11 -0.4 892,169 + Atu0901 0.11 +0.2 892,175 + Atu0901 0.11 +0.5 892,175 + Atu0901 0.11 +0.4 892,175 + Atu0901 0.11 -0.4 892,175 + Atu0901 0.11 -1.6 892,175 + Atu0901 0.11 -2.8 892,183 - Atu0901 0.12 -0.4 892,298 - Atu0901 0.22 -1.7 892,332 - Atu0901 0.25 -1.7 892,332 - Atu0901 0.25 -3.3 892,350 + Atu0901 0.27 -1.4 892,390 + Atu0901 0.30 -1.7 892,449 + Atu0901 0.35 +1.8 892,636 + Atu0901 0.52 -0.3 892,644 - Atu0901 0.53 +0.3 892,772 + Atu0901 0.64 -0.3 892,793 + Atu0901 0.66 -0.4 892,793 + Atu0901 0.66 +1.4 892,827 + Atu0901 0.69 +0.5 892,986 + Atu0901 0.83 +1.9 893,060 - Atu0901 0.89 +0.7 893,075 - +0.5 893,087 + -0.4 893,089 + +1.2 893,095 - -2.6 893,095 - -1.7 893,134 + -0.3 893,155 + -0.5 893,230 + -0.0 893,258 - -0.2 893,312 + +1.1 893,313 + +0.7 893,387 + -1.3 893,743 + Atu0902 0.22 +1.0 893,888 + Atu0902 0.34 -0.7 893,890 + Atu0902 0.34 +0.9 893,913 - Atu0902 0.36 +1.2 893,915 + Atu0902 0.36 -0.6 893,966 + Atu0902 0.41 -0.5 894,004 + Atu0902 0.44 +0.5 894,009 + Atu0902 0.44 +0.7 894,026 + Atu0902 0.46 -0.0 894,048 + Atu0902 0.48 -0.3 894,056 - Atu0902 0.48 +0.5
Or see this region's nucleotide sequence