Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0664 and Atu0665 are separated by 111 nucleotides Atu0665 and Atu0666 are separated by 235 nucleotides
Atu0664: Atu0664 - transcriptional regulator, LysR family, at 659,193 to 660,092
Atu0664
Atu0665: Atu0665 - glycolate oxidase subunit, at 660,204 to 661,637
Atu0665
Atu0666: Atu0666 - glycolate oxidase subunit, at 661,873 to 663,075
Atu0666
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.209 kb on - strand at 659.209 kb on - strand at 659.209 kb on - strand at 659.274 kb on - strand at 659.296 kb on - strand, within Atu0664 at 659.300 kb on + strand, within Atu0664 at 659.308 kb on - strand, within Atu0664 at 659.355 kb on + strand, within Atu0664 at 659.388 kb on - strand, within Atu0664 at 659.398 kb on - strand, within Atu0664 at 659.407 kb on + strand, within Atu0664 at 659.506 kb on + strand, within Atu0664 at 659.568 kb on - strand, within Atu0664 at 659.573 kb on - strand, within Atu0664 at 659.600 kb on + strand, within Atu0664 at 659.674 kb on + strand, within Atu0664 at 659.740 kb on - strand, within Atu0664 at 659.740 kb on - strand, within Atu0664 at 659.747 kb on + strand, within Atu0664 at 659.763 kb on - strand, within Atu0664 at 659.827 kb on + strand, within Atu0664 at 659.881 kb on + strand, within Atu0664 at 659.893 kb on - strand, within Atu0664 at 660.012 kb on + strand at 660.020 kb on + strand at 660.076 kb on - strand at 660.193 kb on + strand at 660.197 kb on - strand at 660.275 kb on + strand at 660.276 kb on - strand at 660.283 kb on - strand at 660.304 kb on - strand at 660.330 kb on - strand at 660.374 kb on + strand, within Atu0665 at 660.382 kb on - strand, within Atu0665 at 660.384 kb on - strand, within Atu0665 at 660.384 kb on - strand, within Atu0665 at 660.421 kb on + strand, within Atu0665 at 660.432 kb on + strand, within Atu0665 at 660.619 kb on - strand, within Atu0665 at 660.667 kb on - strand, within Atu0665 at 660.690 kb on + strand, within Atu0665 at 660.810 kb on - strand, within Atu0665 at 660.868 kb on - strand, within Atu0665 at 660.965 kb on - strand, within Atu0665 at 661.121 kb on + strand, within Atu0665 at 661.199 kb on + strand, within Atu0665 at 661.221 kb on + strand, within Atu0665 at 661.231 kb on + strand, within Atu0665 at 661.256 kb on - strand, within Atu0665 at 661.333 kb on + strand, within Atu0665 at 661.381 kb on + strand, within Atu0665 at 661.399 kb on - strand, within Atu0665 at 661.399 kb on - strand, within Atu0665 at 661.399 kb on - strand, within Atu0665 at 661.494 kb on + strand at 661.539 kb on - strand at 661.575 kb on + strand at 661.603 kb on + strand at 661.611 kb on - strand at 661.630 kb on - strand at 661.633 kb on + strand at 661.706 kb on + strand at 661.780 kb on + strand at 661.869 kb on + strand at 661.972 kb on + strand at 661.980 kb on - strand at 662.009 kb on + strand, within Atu0666 at 662.072 kb on - strand, within Atu0666 at 662.239 kb on + strand, within Atu0666 at 662.247 kb on - strand, within Atu0666 at 662.583 kb on + strand, within Atu0666 at 662.594 kb on - strand, within Atu0666
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 659,209 - +0.3 659,209 - -0.1 659,209 - -1.8 659,274 - -0.2 659,296 - Atu0664 0.11 -0.6 659,300 + Atu0664 0.12 -1.5 659,308 - Atu0664 0.13 -0.6 659,355 + Atu0664 0.18 +0.6 659,388 - Atu0664 0.22 +1.0 659,398 - Atu0664 0.23 +2.0 659,407 + Atu0664 0.24 -1.1 659,506 + Atu0664 0.35 -2.9 659,568 - Atu0664 0.42 +0.7 659,573 - Atu0664 0.42 +0.3 659,600 + Atu0664 0.45 -1.1 659,674 + Atu0664 0.53 -0.4 659,740 - Atu0664 0.61 -0.0 659,740 - Atu0664 0.61 -0.3 659,747 + Atu0664 0.62 +0.3 659,763 - Atu0664 0.63 +1.1 659,827 + Atu0664 0.70 +0.7 659,881 + Atu0664 0.76 -0.4 659,893 - Atu0664 0.78 +2.2 660,012 + -0.7 660,020 + +0.1 660,076 - +0.0 660,193 + -1.5 660,197 - +1.2 660,275 + +0.8 660,276 - +0.2 660,283 - +0.8 660,304 - +0.3 660,330 - -1.3 660,374 + Atu0665 0.12 +0.3 660,382 - Atu0665 0.12 -0.8 660,384 - Atu0665 0.13 +1.4 660,384 - Atu0665 0.13 +0.2 660,421 + Atu0665 0.15 +0.8 660,432 + Atu0665 0.16 -0.6 660,619 - Atu0665 0.29 -0.7 660,667 - Atu0665 0.32 -0.4 660,690 + Atu0665 0.34 +0.7 660,810 - Atu0665 0.42 -0.9 660,868 - Atu0665 0.46 +0.2 660,965 - Atu0665 0.53 +1.1 661,121 + Atu0665 0.64 +2.0 661,199 + Atu0665 0.69 +0.3 661,221 + Atu0665 0.71 -1.3 661,231 + Atu0665 0.72 +2.6 661,256 - Atu0665 0.73 +0.7 661,333 + Atu0665 0.79 +2.1 661,381 + Atu0665 0.82 -0.5 661,399 - Atu0665 0.83 -0.1 661,399 - Atu0665 0.83 +0.2 661,399 - Atu0665 0.83 -0.2 661,494 + +1.8 661,539 - +2.6 661,575 + +0.3 661,603 + +2.1 661,611 - +2.1 661,630 - +0.3 661,633 + +1.3 661,706 + +0.4 661,780 + +0.2 661,869 + +1.5 661,972 + +0.4 661,980 - +0.3 662,009 + Atu0666 0.11 -1.6 662,072 - Atu0666 0.17 +0.7 662,239 + Atu0666 0.30 +0.5 662,247 - Atu0666 0.31 +0.4 662,583 + Atu0666 0.59 -1.1 662,594 - Atu0666 0.60 -0.0
Or see this region's nucleotide sequence