Strain Fitness in Agrobacterium fabrum C58 around Atu8099

Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5047 and Atu5048 are separated by 84 nucleotidesAtu5048 and Atu8099 are separated by 11 nucleotidesAtu8099 and Atu5049 are separated by 199 nucleotides Atu5047: Atu5047 - hypothetical protein, at 46,905 to 47,141 Atu5047 Atu5048: Atu5048 - exodeoxyribonuclease III, at 47,226 to 48,002 Atu5048 Atu8099: Atu8099 - hypothetical protein, at 48,014 to 48,190 Atu8099 Atu5049: Atu5049 - hypothetical protein, at 48,390 to 49,286 Atu5049 Position (kb) 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 47.027 kb on + strand, within Atu5047at 47.059 kb on + strand, within Atu5047at 47.125 kb on - strandat 47.157 kb on - strandat 47.157 kb on - strandat 47.170 kb on - strandat 47.188 kb on + strandat 47.240 kb on + strandat 47.240 kb on + strandat 47.245 kb on + strandat 47.253 kb on - strandat 47.253 kb on - strandat 47.275 kb on + strandat 47.283 kb on - strandat 47.307 kb on + strand, within Atu5048at 47.307 kb on + strand, within Atu5048at 47.315 kb on - strand, within Atu5048at 47.315 kb on - strand, within Atu5048at 47.327 kb on + strand, within Atu5048at 47.327 kb on + strand, within Atu5048at 47.327 kb on - strand, within Atu5048at 47.335 kb on - strand, within Atu5048at 47.417 kb on + strand, within Atu5048at 47.446 kb on + strand, within Atu5048at 47.455 kb on + strand, within Atu5048at 47.459 kb on - strand, within Atu5048at 47.469 kb on + strand, within Atu5048at 47.477 kb on - strand, within Atu5048at 47.477 kb on - strand, within Atu5048at 47.491 kb on + strand, within Atu5048at 47.491 kb on + strand, within Atu5048at 47.494 kb on - strand, within Atu5048at 47.598 kb on - strand, within Atu5048at 47.600 kb on + strand, within Atu5048at 47.608 kb on - strand, within Atu5048at 47.622 kb on - strand, within Atu5048at 47.622 kb on - strand, within Atu5048at 47.622 kb on - strand, within Atu5048at 47.622 kb on - strand, within Atu5048at 47.652 kb on + strand, within Atu5048at 47.786 kb on + strand, within Atu5048at 47.925 kb on - strandat 47.954 kb on - strandat 47.973 kb on - strandat 48.017 kb on + strandat 48.038 kb on + strand, within Atu8099at 48.103 kb on + strand, within Atu8099at 48.126 kb on + strand, within Atu8099at 48.144 kb on + strand, within Atu8099at 48.188 kb on - strandat 48.193 kb on - strandat 48.198 kb on - strandat 48.291 kb on - strandat 48.385 kb on + strandat 48.458 kb on + strandat 48.461 kb on - strandat 48.461 kb on - strandat 48.463 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.506 kb on - strand, within Atu5049at 48.581 kb on + strand, within Atu5049at 48.581 kb on + strand, within Atu5049at 48.581 kb on + strand, within Atu5049at 48.581 kb on + strand, within Atu5049at 48.581 kb on + strand, within Atu5049at 48.589 kb on - strand, within Atu5049at 48.589 kb on - strand, within Atu5049at 48.589 kb on - strand, within Atu5049at 48.648 kb on + strand, within Atu5049at 48.656 kb on - strand, within Atu5049at 48.722 kb on - strand, within Atu5049at 48.733 kb on + strand, within Atu5049at 48.760 kb on - strand, within Atu5049at 48.795 kb on + strand, within Atu5049at 48.815 kb on - strand, within Atu5049at 48.830 kb on - strand, within Atu5049at 48.846 kb on + strand, within Atu5049at 48.863 kb on + strand, within Atu5049at 48.921 kb on - strand, within Atu5049at 48.937 kb on + strand, within Atu5049at 48.991 kb on + strand, within Atu5049at 49.064 kb on + strand, within Atu5049at 49.079 kb on - strand, within Atu5049at 49.161 kb on - strand, within Atu5049

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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47,027 + Atu5047 0.51 +1.5
47,059 + Atu5047 0.65 +0.2
47,125 - -0.9
47,157 - +3.0
47,157 - +1.7
47,170 - +0.4
47,188 + -0.2
47,240 + -0.2
47,240 + -0.1
47,245 + -0.4
47,253 - +0.0
47,253 - +1.6
47,275 + +1.4
47,283 - +0.6
47,307 + Atu5048 0.10 -0.0
47,307 + Atu5048 0.10 +0.4
47,315 - Atu5048 0.11 +0.0
47,315 - Atu5048 0.11 +0.2
47,327 + Atu5048 0.13 -0.9
47,327 + Atu5048 0.13 +0.8
47,327 - Atu5048 0.13 +0.1
47,335 - Atu5048 0.14 -1.0
47,417 + Atu5048 0.25 +0.4
47,446 + Atu5048 0.28 +0.4
47,455 + Atu5048 0.29 +0.6
47,459 - Atu5048 0.30 -0.9
47,469 + Atu5048 0.31 +0.3
47,477 - Atu5048 0.32 -0.8
47,477 - Atu5048 0.32 -1.1
47,491 + Atu5048 0.34 +0.4
47,491 + Atu5048 0.34 -0.7
47,494 - Atu5048 0.34 -0.2
47,598 - Atu5048 0.48 +2.1
47,600 + Atu5048 0.48 -1.4
47,608 - Atu5048 0.49 +0.2
47,622 - Atu5048 0.51 -1.6
47,622 - Atu5048 0.51 -1.5
47,622 - Atu5048 0.51 +0.6
47,622 - Atu5048 0.51 +0.2
47,652 + Atu5048 0.55 +0.3
47,786 + Atu5048 0.72 -0.8
47,925 - +0.2
47,954 - -0.0
47,973 - -1.9
48,017 + -0.3
48,038 + Atu8099 0.14 -1.3
48,103 + Atu8099 0.50 -2.3
48,126 + Atu8099 0.63 -0.9
48,144 + Atu8099 0.73 -1.8
48,188 - +0.6
48,193 - -0.3
48,198 - +0.7
48,291 - -0.9
48,385 + -0.5
48,458 + +0.6
48,461 - +0.4
48,461 - -0.9
48,463 - +0.6
48,466 - -2.9
48,466 - +0.8
48,466 - -0.4
48,466 - +0.2
48,466 - -1.8
48,506 - Atu5049 0.13 +0.4
48,581 + Atu5049 0.21 +0.3
48,581 + Atu5049 0.21 -0.1
48,581 + Atu5049 0.21 +2.0
48,581 + Atu5049 0.21 +1.7
48,581 + Atu5049 0.21 -0.2
48,589 - Atu5049 0.22 -2.2
48,589 - Atu5049 0.22 +0.5
48,589 - Atu5049 0.22 -0.3
48,648 + Atu5049 0.29 +0.5
48,656 - Atu5049 0.30 +0.2
48,722 - Atu5049 0.37 -3.1
48,733 + Atu5049 0.38 +0.5
48,760 - Atu5049 0.41 +0.3
48,795 + Atu5049 0.45 -0.2
48,815 - Atu5049 0.47 +0.7
48,830 - Atu5049 0.49 -0.0
48,846 + Atu5049 0.51 +0.2
48,863 + Atu5049 0.53 -0.1
48,921 - Atu5049 0.59 +0.0
48,937 + Atu5049 0.61 -0.2
48,991 + Atu5049 0.67 +0.6
49,064 + Atu5049 0.75 +0.4
49,079 - Atu5049 0.77 +0.7
49,161 - Atu5049 0.86 +1.5

Or see this region's nucleotide sequence