Strain Fitness in Agrobacterium fabrum C58 around Atu5057

Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5056 and Atu5057 are separated by 35 nucleotidesAtu5057 and Atu5058 are separated by 356 nucleotides Atu5056: Atu5056 - hypothetical protein, at 55,435 to 56,250 Atu5056 Atu5057: Atu5057 - hypothetical protein, at 56,286 to 56,594 Atu5057 Atu5058: Atu5058 - ABC transporter substrate binding protein (glycerol-3-phosphate), at 56,951 to 58,210 Atu5058 Position (kb) 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 55.336 kb on - strandat 55.360 kb on + strandat 55.368 kb on - strandat 55.490 kb on - strandat 55.520 kb on + strand, within Atu5056at 55.523 kb on - strand, within Atu5056at 55.552 kb on + strand, within Atu5056at 55.560 kb on - strand, within Atu5056at 55.602 kb on + strand, within Atu5056at 55.608 kb on + strand, within Atu5056at 55.608 kb on + strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.625 kb on + strand, within Atu5056at 55.633 kb on - strand, within Atu5056at 55.636 kb on + strand, within Atu5056at 55.677 kb on + strand, within Atu5056at 55.685 kb on - strand, within Atu5056at 55.704 kb on + strand, within Atu5056at 55.755 kb on + strand, within Atu5056at 55.789 kb on - strand, within Atu5056at 55.902 kb on + strand, within Atu5056at 55.910 kb on - strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.988 kb on + strand, within Atu5056at 56.035 kb on - strand, within Atu5056at 56.035 kb on - strand, within Atu5056at 56.073 kb on + strand, within Atu5056at 56.073 kb on + strand, within Atu5056at 56.083 kb on - strand, within Atu5056at 56.126 kb on - strand, within Atu5056at 56.148 kb on - strand, within Atu5056at 56.179 kb on - strandat 56.219 kb on + strandat 56.245 kb on + strandat 56.253 kb on - strandat 56.277 kb on - strandat 56.289 kb on + strandat 56.294 kb on + strandat 56.302 kb on - strandat 56.312 kb on - strandat 56.312 kb on - strandat 56.336 kb on - strand, within Atu5057at 56.347 kb on + strand, within Atu5057at 56.625 kb on - strandat 56.625 kb on - strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.649 kb on + strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.657 kb on - strandat 56.659 kb on + strandat 56.659 kb on + strandat 56.667 kb on - strandat 56.788 kb on + strandat 56.809 kb on + strandat 56.859 kb on - strandat 56.981 kb on - strandat 57.010 kb on + strandat 57.026 kb on + strandat 57.106 kb on + strand, within Atu5058at 57.221 kb on - strand, within Atu5058at 57.221 kb on - strand, within Atu5058at 57.262 kb on - strand, within Atu5058at 57.346 kb on + strand, within Atu5058at 57.351 kb on + strand, within Atu5058at 57.354 kb on - strand, within Atu5058at 57.369 kb on - strand, within Atu5058at 57.454 kb on + strand, within Atu5058at 57.460 kb on - strand, within Atu5058at 57.465 kb on - strand, within Atu5058at 57.542 kb on + strand, within Atu5058at 57.542 kb on + strand, within Atu5058at 57.550 kb on - strand, within Atu5058

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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55,336 - -0.5
55,360 + -4.1
55,368 - +0.4
55,490 - -1.0
55,520 + Atu5056 0.10 -1.6
55,523 - Atu5056 0.11 -1.0
55,552 + Atu5056 0.14 +1.7
55,560 - Atu5056 0.15 +1.6
55,602 + Atu5056 0.20 -1.7
55,608 + Atu5056 0.21 +0.3
55,608 + Atu5056 0.21 +0.4
55,616 - Atu5056 0.22 +0.3
55,616 - Atu5056 0.22 -1.3
55,616 - Atu5056 0.22 +0.4
55,625 + Atu5056 0.23 +1.5
55,633 - Atu5056 0.24 +0.4
55,636 + Atu5056 0.25 -0.5
55,677 + Atu5056 0.30 -0.4
55,685 - Atu5056 0.31 +0.6
55,704 + Atu5056 0.33 -1.9
55,755 + Atu5056 0.39 -0.2
55,789 - Atu5056 0.43 +0.2
55,902 + Atu5056 0.57 -1.0
55,910 - Atu5056 0.58 +0.1
55,957 + Atu5056 0.64 -2.0
55,957 + Atu5056 0.64 +0.4
55,957 + Atu5056 0.64 +0.2
55,957 + Atu5056 0.64 -0.4
55,957 + Atu5056 0.64 -0.3
55,957 + Atu5056 0.64 -1.0
55,957 + Atu5056 0.64 +0.5
55,957 + Atu5056 0.64 +0.5
55,965 - Atu5056 0.65 +0.2
55,965 - Atu5056 0.65 +0.6
55,965 - Atu5056 0.65 -0.2
55,988 + Atu5056 0.68 +0.8
56,035 - Atu5056 0.74 -0.2
56,035 - Atu5056 0.74 +0.9
56,073 + Atu5056 0.78 +0.1
56,073 + Atu5056 0.78 -1.4
56,083 - Atu5056 0.79 +0.2
56,126 - Atu5056 0.85 +0.3
56,148 - Atu5056 0.87 +1.3
56,179 - +0.1
56,219 + -1.0
56,245 + -0.1
56,253 - +0.3
56,277 - +1.7
56,289 + -1.3
56,294 + -1.0
56,302 - +3.3
56,312 - +0.8
56,312 - +1.5
56,336 - Atu5057 0.16 -0.1
56,347 + Atu5057 0.20 +2.4
56,625 - -0.6
56,625 - -2.8
56,649 + +0.2
56,649 + -0.3
56,649 + -2.6
56,649 + +2.0
56,649 + -0.5
56,657 - -0.2
56,657 - -1.6
56,657 - +3.3
56,657 - +0.4
56,657 - -0.5
56,657 - +1.1
56,659 + -0.5
56,659 + -0.3
56,667 - -0.5
56,788 + +0.4
56,809 + +0.7
56,859 - -0.0
56,981 - +0.1
57,010 + +0.2
57,026 + +0.7
57,106 + Atu5058 0.12 -0.8
57,221 - Atu5058 0.21 +0.5
57,221 - Atu5058 0.21 +2.9
57,262 - Atu5058 0.25 +0.1
57,346 + Atu5058 0.31 +0.1
57,351 + Atu5058 0.32 -0.4
57,354 - Atu5058 0.32 -0.7
57,369 - Atu5058 0.33 -1.4
57,454 + Atu5058 0.40 -0.1
57,460 - Atu5058 0.40 +0.1
57,465 - Atu5058 0.41 +0.5
57,542 + Atu5058 0.47 -0.3
57,542 + Atu5058 0.47 -0.2
57,550 - Atu5058 0.48 -0.8

Or see this region's nucleotide sequence