Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3746 and Atu3747 are separated by 248 nucleotides Atu3747 and Atu3748 are separated by 201 nucleotides
Atu3746: Atu3746 - hypothetical protein, at 829,813 to 830,598
Atu3746
Atu3747: Atu3747 - hypothetical protein, at 830,847 to 831,869
Atu3747
Atu3748: Atu3748 - extragenic suppressor protein SuhB, at 832,071 to 832,871
Atu3748
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 829.860 kb on + strand at 829.868 kb on - strand at 830.025 kb on - strand, within Atu3746 at 830.239 kb on - strand, within Atu3746 at 830.331 kb on + strand, within Atu3746 at 830.339 kb on + strand, within Atu3746 at 830.692 kb on - strand at 830.759 kb on + strand at 830.767 kb on - strand at 830.878 kb on - strand at 830.960 kb on + strand, within Atu3747 at 830.965 kb on + strand, within Atu3747 at 831.069 kb on - strand, within Atu3747 at 831.165 kb on + strand, within Atu3747 at 831.178 kb on - strand, within Atu3747 at 831.188 kb on - strand, within Atu3747 at 831.222 kb on - strand, within Atu3747 at 831.245 kb on - strand, within Atu3747 at 831.291 kb on + strand, within Atu3747 at 831.325 kb on - strand, within Atu3747 at 831.369 kb on - strand, within Atu3747 at 831.382 kb on + strand, within Atu3747 at 831.390 kb on - strand, within Atu3747 at 831.432 kb on + strand, within Atu3747 at 831.531 kb on + strand, within Atu3747 at 831.592 kb on + strand, within Atu3747 at 831.622 kb on + strand, within Atu3747 at 831.628 kb on - strand, within Atu3747 at 831.630 kb on - strand, within Atu3747 at 831.783 kb on + strand at 831.803 kb on - strand at 831.810 kb on + strand at 831.830 kb on - strand at 831.844 kb on + strand at 832.027 kb on + strand at 832.035 kb on - strand at 832.035 kb on - strand at 832.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 829,860 + -0.2 829,868 - +0.0 830,025 - Atu3746 0.27 -0.1 830,239 - Atu3746 0.54 -0.2 830,331 + Atu3746 0.66 -0.8 830,339 + Atu3746 0.67 -1.2 830,692 - -0.6 830,759 + -2.4 830,767 - -0.3 830,878 - +0.5 830,960 + Atu3747 0.11 -0.8 830,965 + Atu3747 0.12 -1.1 831,069 - Atu3747 0.22 -3.3 831,165 + Atu3747 0.31 -0.6 831,178 - Atu3747 0.32 -2.7 831,188 - Atu3747 0.33 -0.2 831,222 - Atu3747 0.37 -0.2 831,245 - Atu3747 0.39 -1.0 831,291 + Atu3747 0.43 -0.9 831,325 - Atu3747 0.47 -2.1 831,369 - Atu3747 0.51 -0.3 831,382 + Atu3747 0.52 +0.1 831,390 - Atu3747 0.53 +0.0 831,432 + Atu3747 0.57 -0.6 831,531 + Atu3747 0.67 +0.7 831,592 + Atu3747 0.73 -0.2 831,622 + Atu3747 0.76 -0.1 831,628 - Atu3747 0.76 -0.8 831,630 - Atu3747 0.77 +0.3 831,783 + -0.2 831,803 - +0.2 831,810 + -1.3 831,830 - -0.1 831,844 + +0.7 832,027 + -1.3 832,035 - -0.1 832,035 - +0.3 832,085 - -2.9
Or see this region's nucleotide sequence