Strain Fitness in Agrobacterium fabrum C58 around Atu3669

Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3667 and Atu3668 are separated by 31 nucleotidesAtu3668 and Atu3669 are separated by 114 nucleotidesAtu3669 and Atu3670 are separated by 31 nucleotides Atu3667: Atu3667 - aspartate alpha-decarboxylase, at 715,559 to 716,026 Atu3667 Atu3668: Atu3668 - siderophore biosynthesis protein, at 716,058 to 716,579 Atu3668 Atu3669: Atu3669 - siderophore biosynthesis protein, at 716,694 to 718,055 Atu3669 Atu3670: Atu3670 - siderophore biosynthesis protein, at 718,087 to 721,473 Atu3670 Position (kb) 716 717 718 719Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 715.749 kb on + strand, within Atu3667at 715.849 kb on + strand, within Atu3667at 715.876 kb on - strand, within Atu3667at 715.883 kb on - strand, within Atu3667at 715.996 kb on + strandat 716.001 kb on + strandat 716.001 kb on + strandat 716.150 kb on + strand, within Atu3668at 716.355 kb on - strand, within Atu3668at 716.458 kb on - strand, within Atu3668at 716.517 kb on - strand, within Atu3668at 716.612 kb on - strandat 716.638 kb on + strandat 716.646 kb on - strandat 716.646 kb on - strandat 716.714 kb on - strandat 716.716 kb on - strandat 716.738 kb on + strandat 716.770 kb on - strandat 716.770 kb on - strandat 716.770 kb on - strandat 716.781 kb on + strandat 716.788 kb on - strandat 716.789 kb on - strandat 716.837 kb on + strand, within Atu3669at 716.845 kb on + strand, within Atu3669at 716.981 kb on - strand, within Atu3669at 717.036 kb on + strand, within Atu3669at 717.039 kb on - strand, within Atu3669at 717.039 kb on - strand, within Atu3669at 717.039 kb on - strand, within Atu3669at 717.148 kb on + strand, within Atu3669at 717.208 kb on - strand, within Atu3669at 717.216 kb on + strand, within Atu3669at 717.269 kb on + strand, within Atu3669at 717.321 kb on + strand, within Atu3669at 717.334 kb on + strand, within Atu3669at 717.342 kb on - strand, within Atu3669at 717.342 kb on - strand, within Atu3669at 717.443 kb on + strand, within Atu3669at 717.535 kb on - strand, within Atu3669at 717.554 kb on - strand, within Atu3669at 717.560 kb on + strand, within Atu3669at 717.648 kb on - strand, within Atu3669at 717.688 kb on - strand, within Atu3669at 717.712 kb on - strand, within Atu3669at 717.714 kb on - strand, within Atu3669at 717.714 kb on - strand, within Atu3669at 717.856 kb on - strand, within Atu3669at 717.995 kb on + strandat 718.052 kb on - strandat 718.062 kb on + strandat 718.169 kb on + strandat 718.184 kb on + strandat 718.232 kb on - strandat 718.271 kb on - strandat 718.388 kb on - strandat 718.470 kb on - strand, within Atu3670at 718.533 kb on + strand, within Atu3670at 718.555 kb on + strand, within Atu3670at 718.575 kb on + strand, within Atu3670at 718.594 kb on - strand, within Atu3670at 718.602 kb on - strand, within Atu3670at 718.623 kb on - strand, within Atu3670at 718.625 kb on - strand, within Atu3670at 718.633 kb on + strand, within Atu3670at 718.682 kb on + strand, within Atu3670at 718.808 kb on - strand, within Atu3670at 718.909 kb on + strand, within Atu3670at 718.922 kb on - strand, within Atu3670at 718.922 kb on - strand, within Atu3670at 718.922 kb on - strand, within Atu3670at 718.994 kb on - strand, within Atu3670at 719.002 kb on - strand, within Atu3670at 719.007 kb on - strand, within Atu3670

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
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715,749 + Atu3667 0.41 +0.2
715,849 + Atu3667 0.62 +1.5
715,876 - Atu3667 0.68 +0.6
715,883 - Atu3667 0.69 +1.2
715,996 + +0.6
716,001 + +0.3
716,001 + +0.5
716,150 + Atu3668 0.18 -0.5
716,355 - Atu3668 0.57 +0.5
716,458 - Atu3668 0.77 +0.1
716,517 - Atu3668 0.88 -0.9
716,612 - -0.8
716,638 + +0.0
716,646 - -0.1
716,646 - +0.2
716,714 - -0.3
716,716 - -2.5
716,738 + +0.5
716,770 - +1.0
716,770 - -0.3
716,770 - +1.4
716,781 + +0.5
716,788 - -0.3
716,789 - -0.0
716,837 + Atu3669 0.10 -2.6
716,845 + Atu3669 0.11 +0.9
716,981 - Atu3669 0.21 +1.0
717,036 + Atu3669 0.25 -0.1
717,039 - Atu3669 0.25 +0.2
717,039 - Atu3669 0.25 -0.2
717,039 - Atu3669 0.25 -1.1
717,148 + Atu3669 0.33 -0.9
717,208 - Atu3669 0.38 +0.8
717,216 + Atu3669 0.38 -3.8
717,269 + Atu3669 0.42 +1.6
717,321 + Atu3669 0.46 +0.7
717,334 + Atu3669 0.47 +0.7
717,342 - Atu3669 0.48 +0.9
717,342 - Atu3669 0.48 -0.9
717,443 + Atu3669 0.55 -3.3
717,535 - Atu3669 0.62 +0.4
717,554 - Atu3669 0.63 +0.9
717,560 + Atu3669 0.64 -2.3
717,648 - Atu3669 0.70 -0.3
717,688 - Atu3669 0.73 +0.2
717,712 - Atu3669 0.75 +1.9
717,714 - Atu3669 0.75 +0.5
717,714 - Atu3669 0.75 +1.6
717,856 - Atu3669 0.85 +1.6
717,995 + -0.1
718,052 - +0.0
718,062 + -2.2
718,169 + +0.6
718,184 + -0.3
718,232 - -0.9
718,271 - +0.3
718,388 - -0.5
718,470 - Atu3670 0.11 +2.1
718,533 + Atu3670 0.13 +0.2
718,555 + Atu3670 0.14 -0.3
718,575 + Atu3670 0.14 +1.3
718,594 - Atu3670 0.15 +0.5
718,602 - Atu3670 0.15 +0.5
718,623 - Atu3670 0.16 +0.1
718,625 - Atu3670 0.16 +0.5
718,633 + Atu3670 0.16 -1.1
718,682 + Atu3670 0.18 +0.1
718,808 - Atu3670 0.21 -0.2
718,909 + Atu3670 0.24 +0.1
718,922 - Atu3670 0.25 +0.3
718,922 - Atu3670 0.25 +1.4
718,922 - Atu3670 0.25 -2.4
718,994 - Atu3670 0.27 -1.6
719,002 - Atu3670 0.27 +2.4
719,007 - Atu3670 0.27 +0.0

Or see this region's nucleotide sequence