Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3555 and Atu3556 are separated by 131 nucleotides Atu3556 and Atu8033 are separated by 13 nucleotides Atu8033 and Atu3557 are separated by 132 nucleotides
Atu3555: Atu3555 - hypothetical protein, at 605,840 to 606,766
Atu3555
Atu3556: Atu3556 - exopolysaccharide polymerization/transport protein, at 606,898 to 609,147
Atu3556
Atu8033: Atu8033 - hypothetical protein, at 609,161 to 609,817
Atu8033
Atu3557: Atu3557 - hypothetical protein, at 609,950 to 611,419
Atu3557
Position (kb) 606
607
608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 605.920 kb on - strand at 605.977 kb on - strand, within Atu3555 at 605.984 kb on + strand, within Atu3555 at 606.029 kb on + strand, within Atu3555 at 606.037 kb on - strand, within Atu3555 at 606.073 kb on - strand, within Atu3555 at 606.073 kb on - strand, within Atu3555 at 606.096 kb on - strand, within Atu3555 at 606.159 kb on + strand, within Atu3555 at 606.206 kb on + strand, within Atu3555 at 606.236 kb on - strand, within Atu3555 at 606.254 kb on - strand, within Atu3555 at 606.279 kb on - strand, within Atu3555 at 606.292 kb on + strand, within Atu3555 at 606.302 kb on - strand, within Atu3555 at 606.326 kb on - strand, within Atu3555 at 606.338 kb on + strand, within Atu3555 at 606.346 kb on - strand, within Atu3555 at 606.377 kb on + strand, within Atu3555 at 606.429 kb on + strand, within Atu3555 at 606.544 kb on + strand, within Atu3555 at 606.597 kb on - strand, within Atu3555 at 606.677 kb on - strand at 606.753 kb on - strand at 606.758 kb on - strand at 607.069 kb on - strand at 607.137 kb on - strand, within Atu3556 at 607.287 kb on + strand, within Atu3556 at 607.409 kb on - strand, within Atu3556 at 607.415 kb on - strand, within Atu3556 at 607.417 kb on - strand, within Atu3556 at 607.435 kb on - strand, within Atu3556 at 607.591 kb on - strand, within Atu3556 at 607.685 kb on + strand, within Atu3556 at 607.717 kb on - strand, within Atu3556 at 607.744 kb on - strand, within Atu3556 at 607.786 kb on + strand, within Atu3556 at 607.877 kb on + strand, within Atu3556 at 607.881 kb on + strand, within Atu3556 at 607.885 kb on - strand, within Atu3556 at 607.889 kb on - strand, within Atu3556 at 607.897 kb on - strand, within Atu3556 at 607.907 kb on - strand, within Atu3556 at 607.957 kb on - strand, within Atu3556 at 608.121 kb on + strand, within Atu3556 at 608.244 kb on + strand, within Atu3556 at 608.244 kb on + strand, within Atu3556 at 608.252 kb on - strand, within Atu3556 at 608.252 kb on - strand, within Atu3556 at 608.252 kb on - strand, within Atu3556 at 608.383 kb on - strand, within Atu3556 at 608.383 kb on - strand, within Atu3556 at 608.393 kb on - strand, within Atu3556 at 608.440 kb on - strand, within Atu3556 at 608.440 kb on - strand, within Atu3556 at 608.467 kb on + strand, within Atu3556 at 608.495 kb on + strand, within Atu3556 at 608.503 kb on - strand, within Atu3556 at 608.557 kb on + strand, within Atu3556 at 608.646 kb on - strand, within Atu3556 at 608.646 kb on - strand, within Atu3556 at 608.653 kb on + strand, within Atu3556 at 608.754 kb on - strand, within Atu3556 at 608.862 kb on + strand, within Atu3556 at 608.917 kb on + strand, within Atu3556 at 608.973 kb on + strand at 608.995 kb on + strand at 608.997 kb on + strand at 609.003 kb on - strand at 609.005 kb on - strand at 609.142 kb on + strand at 609.202 kb on - strand at 609.228 kb on - strand, within Atu8033 at 609.348 kb on - strand, within Atu8033 at 609.453 kb on + strand, within Atu8033 at 609.545 kb on + strand, within Atu8033 at 609.552 kb on - strand, within Atu8033 at 609.674 kb on + strand, within Atu8033 at 609.721 kb on - strand, within Atu8033 at 609.841 kb on - strand at 609.875 kb on - strand at 609.915 kb on + strand at 609.972 kb on + strand at 609.994 kb on - strand at 610.021 kb on + strand at 610.026 kb on - strand at 610.111 kb on + strand, within Atu3557 at 610.119 kb on - strand, within Atu3557 at 610.119 kb on - strand, within Atu3557
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 605,920 - -1.6 605,977 - Atu3555 0.15 -0.4 605,984 + Atu3555 0.16 +0.4 606,029 + Atu3555 0.20 -0.8 606,037 - Atu3555 0.21 +0.5 606,073 - Atu3555 0.25 +1.7 606,073 - Atu3555 0.25 -2.3 606,096 - Atu3555 0.28 -0.7 606,159 + Atu3555 0.34 -0.0 606,206 + Atu3555 0.39 -2.3 606,236 - Atu3555 0.43 -1.2 606,254 - Atu3555 0.45 +1.9 606,279 - Atu3555 0.47 -0.2 606,292 + Atu3555 0.49 +0.0 606,302 - Atu3555 0.50 +0.7 606,326 - Atu3555 0.52 +0.5 606,338 + Atu3555 0.54 -0.3 606,346 - Atu3555 0.55 -1.5 606,377 + Atu3555 0.58 -1.4 606,429 + Atu3555 0.64 -1.5 606,544 + Atu3555 0.76 -0.1 606,597 - Atu3555 0.82 +0.5 606,677 - +0.6 606,753 - +0.0 606,758 - -0.8 607,069 - -0.8 607,137 - Atu3556 0.11 +0.7 607,287 + Atu3556 0.17 -1.0 607,409 - Atu3556 0.23 -1.5 607,415 - Atu3556 0.23 +0.4 607,417 - Atu3556 0.23 -2.7 607,435 - Atu3556 0.24 -0.8 607,591 - Atu3556 0.31 +1.7 607,685 + Atu3556 0.35 -0.7 607,717 - Atu3556 0.36 -0.3 607,744 - Atu3556 0.38 -0.8 607,786 + Atu3556 0.39 +0.7 607,877 + Atu3556 0.44 +1.0 607,881 + Atu3556 0.44 -1.3 607,885 - Atu3556 0.44 -0.0 607,889 - Atu3556 0.44 -1.6 607,897 - Atu3556 0.44 -0.4 607,907 - Atu3556 0.45 +0.1 607,957 - Atu3556 0.47 -0.4 608,121 + Atu3556 0.54 -1.0 608,244 + Atu3556 0.60 +1.3 608,244 + Atu3556 0.60 -0.8 608,252 - Atu3556 0.60 -0.8 608,252 - Atu3556 0.60 +0.3 608,252 - Atu3556 0.60 -0.8 608,383 - Atu3556 0.66 -1.3 608,383 - Atu3556 0.66 +0.7 608,393 - Atu3556 0.66 +0.6 608,440 - Atu3556 0.69 -1.3 608,440 - Atu3556 0.69 +2.1 608,467 + Atu3556 0.70 +0.2 608,495 + Atu3556 0.71 -0.3 608,503 - Atu3556 0.71 +0.1 608,557 + Atu3556 0.74 -0.9 608,646 - Atu3556 0.78 +0.3 608,646 - Atu3556 0.78 +0.2 608,653 + Atu3556 0.78 +0.4 608,754 - Atu3556 0.82 -1.4 608,862 + Atu3556 0.87 -0.2 608,917 + Atu3556 0.90 +0.4 608,973 + -0.6 608,995 + -1.1 608,997 + +0.7 609,003 - +0.9 609,005 - -3.1 609,142 + -0.7 609,202 - -0.6 609,228 - Atu8033 0.10 -2.4 609,348 - Atu8033 0.28 +2.0 609,453 + Atu8033 0.44 -0.0 609,545 + Atu8033 0.58 -0.5 609,552 - Atu8033 0.60 +0.5 609,674 + Atu8033 0.78 +0.1 609,721 - Atu8033 0.85 +1.2 609,841 - +0.2 609,875 - +1.6 609,915 + -0.2 609,972 + -1.8 609,994 - +0.5 610,021 + +0.1 610,026 - -0.8 610,111 + Atu3557 0.11 +0.6 610,119 - Atu3557 0.11 -1.2 610,119 - Atu3557 0.11 +0.1
Or see this region's nucleotide sequence