Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3246 and Atu3247 are separated by 42 nucleotides Atu3247 and Atu3248 overlap by 4 nucleotides Atu3248 and Atu3249 are separated by 35 nucleotides
Atu3246: Atu3246 - amino acid ABC transporter substrate-binding protein, at 265,006 to 265,908
Atu3246
Atu3247: Atu3247 - cell division topological specificity factor MinE, at 265,951 to 266,211
Atu3247
Atu3248: Atu3248 - cell division inhibitor, at 266,208 to 267,023
Atu3248
Atu3249: Atu3249 - septum formation inhibitor, at 267,059 to 267,778
Atu3249
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 265.077 kb on + strand at 265.172 kb on + strand, within Atu3246 at 265.180 kb on - strand, within Atu3246 at 265.180 kb on - strand, within Atu3246 at 265.199 kb on + strand, within Atu3246 at 265.265 kb on - strand, within Atu3246 at 265.346 kb on - strand, within Atu3246 at 265.356 kb on + strand, within Atu3246 at 265.434 kb on - strand, within Atu3246 at 265.705 kb on - strand, within Atu3246 at 265.719 kb on + strand, within Atu3246 at 265.832 kb on + strand at 265.883 kb on + strand at 265.883 kb on + strand at 265.917 kb on + strand at 265.948 kb on + strand at 265.956 kb on - strand at 265.956 kb on - strand at 266.258 kb on - strand at 266.313 kb on + strand, within Atu3248 at 266.378 kb on + strand, within Atu3248 at 266.396 kb on + strand, within Atu3248 at 266.406 kb on + strand, within Atu3248 at 266.409 kb on - strand, within Atu3248 at 266.577 kb on - strand, within Atu3248 at 266.587 kb on - strand, within Atu3248 at 266.636 kb on + strand, within Atu3248 at 266.682 kb on + strand, within Atu3248 at 266.740 kb on + strand, within Atu3248 at 266.834 kb on - strand, within Atu3248 at 266.847 kb on + strand, within Atu3248 at 266.872 kb on - strand, within Atu3248 at 266.880 kb on - strand, within Atu3248 at 266.917 kb on + strand, within Atu3248 at 266.917 kb on + strand, within Atu3248 at 266.925 kb on - strand, within Atu3248 at 267.027 kb on + strand at 267.028 kb on - strand at 267.032 kb on + strand at 267.032 kb on + strand at 267.040 kb on - strand at 267.040 kb on - strand at 267.155 kb on - strand, within Atu3249
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 265,077 + -1.5 265,172 + Atu3246 0.18 +1.2 265,180 - Atu3246 0.19 +0.8 265,180 - Atu3246 0.19 -0.8 265,199 + Atu3246 0.21 +2.1 265,265 - Atu3246 0.29 +0.5 265,346 - Atu3246 0.38 -1.3 265,356 + Atu3246 0.39 -2.3 265,434 - Atu3246 0.47 -1.3 265,705 - Atu3246 0.77 +0.9 265,719 + Atu3246 0.79 +0.6 265,832 + -0.2 265,883 + -0.9 265,883 + -2.1 265,917 + +0.5 265,948 + +0.3 265,956 - +1.7 265,956 - -0.3 266,258 - -0.1 266,313 + Atu3248 0.13 -0.9 266,378 + Atu3248 0.21 -2.4 266,396 + Atu3248 0.23 +0.1 266,406 + Atu3248 0.24 -1.5 266,409 - Atu3248 0.25 -1.6 266,577 - Atu3248 0.45 -1.0 266,587 - Atu3248 0.46 +1.1 266,636 + Atu3248 0.52 -1.3 266,682 + Atu3248 0.58 -1.5 266,740 + Atu3248 0.65 -0.5 266,834 - Atu3248 0.77 -1.0 266,847 + Atu3248 0.78 -0.1 266,872 - Atu3248 0.81 -0.8 266,880 - Atu3248 0.82 -1.3 266,917 + Atu3248 0.87 -0.5 266,917 + Atu3248 0.87 -1.2 266,925 - Atu3248 0.88 +1.1 267,027 + -2.6 267,028 - +0.8 267,032 + -2.3 267,032 + -0.1 267,040 - -0.9 267,040 - -0.3 267,155 - Atu3249 0.13 -2.3
Or see this region's nucleotide sequence