Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3235 and Atu3236 are separated by 144 nucleotides Atu3236 and Atu3237 are separated by 17 nucleotides Atu3237 and Atu3238 overlap by 8 nucleotides
Atu3235: Atu3235 - hypothetical protein, at 251,338 to 252,390
Atu3235
Atu3236: Atu3236 - sugar ABC transporter ATPase, at 252,535 to 253,608
Atu3236
Atu3237: Atu3237 - sugar ABC transporter permease, at 253,626 to 254,474
Atu3237
Atu3238: Atu3238 - sugar ABC transporter permease, at 254,467 to 255,399
Atu3238
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.592 kb on + strand, within Atu3235 at 251.602 kb on + strand, within Atu3235 at 251.610 kb on - strand, within Atu3235 at 251.654 kb on + strand, within Atu3235 at 251.817 kb on - strand, within Atu3235 at 251.901 kb on + strand, within Atu3235 at 251.930 kb on - strand, within Atu3235 at 251.935 kb on - strand, within Atu3235 at 251.953 kb on - strand, within Atu3235 at 252.026 kb on + strand, within Atu3235 at 252.036 kb on + strand, within Atu3235 at 252.057 kb on - strand, within Atu3235 at 252.057 kb on - strand, within Atu3235 at 252.067 kb on - strand, within Atu3235 at 252.086 kb on - strand, within Atu3235 at 252.148 kb on - strand, within Atu3235 at 252.194 kb on - strand, within Atu3235 at 252.262 kb on + strand, within Atu3235 at 252.331 kb on - strand at 252.341 kb on - strand at 252.559 kb on + strand at 252.559 kb on + strand at 252.567 kb on - strand at 252.567 kb on - strand at 252.567 kb on - strand at 252.573 kb on - strand at 252.583 kb on - strand at 252.605 kb on + strand at 252.637 kb on - strand at 252.656 kb on - strand, within Atu3236 at 252.678 kb on - strand, within Atu3236 at 252.687 kb on - strand, within Atu3236 at 252.713 kb on + strand, within Atu3236 at 252.799 kb on - strand, within Atu3236 at 252.878 kb on + strand, within Atu3236 at 252.993 kb on + strand, within Atu3236 at 253.029 kb on + strand, within Atu3236 at 253.029 kb on + strand, within Atu3236 at 253.045 kb on + strand, within Atu3236 at 253.053 kb on - strand, within Atu3236 at 253.076 kb on + strand, within Atu3236 at 253.172 kb on - strand, within Atu3236 at 253.286 kb on + strand, within Atu3236 at 253.312 kb on - strand, within Atu3236 at 253.319 kb on - strand, within Atu3236 at 253.361 kb on - strand, within Atu3236 at 253.397 kb on - strand, within Atu3236 at 253.411 kb on - strand, within Atu3236 at 253.474 kb on - strand, within Atu3236 at 253.584 kb on - strand at 253.688 kb on - strand at 253.766 kb on + strand, within Atu3237 at 253.892 kb on + strand, within Atu3237 at 254.074 kb on + strand, within Atu3237 at 254.165 kb on + strand, within Atu3237 at 254.175 kb on + strand, within Atu3237 at 254.212 kb on - strand, within Atu3237 at 254.271 kb on + strand, within Atu3237 at 254.431 kb on - strand at 254.463 kb on - strand at 254.468 kb on + strand at 254.582 kb on + strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.590 kb on - strand, within Atu3238 at 254.597 kb on + strand, within Atu3238
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 251,592 + Atu3235 0.24 -2.3 251,602 + Atu3235 0.25 -0.4 251,610 - Atu3235 0.26 +1.1 251,654 + Atu3235 0.30 +2.0 251,817 - Atu3235 0.45 +1.0 251,901 + Atu3235 0.53 -2.2 251,930 - Atu3235 0.56 +0.8 251,935 - Atu3235 0.57 -0.4 251,953 - Atu3235 0.58 +1.1 252,026 + Atu3235 0.65 -1.7 252,036 + Atu3235 0.66 -0.3 252,057 - Atu3235 0.68 +1.0 252,057 - Atu3235 0.68 -0.3 252,067 - Atu3235 0.69 +0.2 252,086 - Atu3235 0.71 +0.1 252,148 - Atu3235 0.77 -0.4 252,194 - Atu3235 0.81 +0.4 252,262 + Atu3235 0.88 +0.1 252,331 - -1.0 252,341 - -2.4 252,559 + -0.3 252,559 + -1.8 252,567 - -1.1 252,567 - -0.5 252,567 - +1.2 252,573 - -1.7 252,583 - -0.2 252,605 + +2.6 252,637 - +0.8 252,656 - Atu3236 0.11 -1.4 252,678 - Atu3236 0.13 -1.0 252,687 - Atu3236 0.14 -0.4 252,713 + Atu3236 0.17 -0.2 252,799 - Atu3236 0.25 -1.1 252,878 + Atu3236 0.32 -0.4 252,993 + Atu3236 0.43 -1.1 253,029 + Atu3236 0.46 +0.4 253,029 + Atu3236 0.46 -0.0 253,045 + Atu3236 0.47 -1.3 253,053 - Atu3236 0.48 -0.1 253,076 + Atu3236 0.50 -0.8 253,172 - Atu3236 0.59 +1.4 253,286 + Atu3236 0.70 -1.1 253,312 - Atu3236 0.72 -1.7 253,319 - Atu3236 0.73 -3.1 253,361 - Atu3236 0.77 -1.5 253,397 - Atu3236 0.80 -0.5 253,411 - Atu3236 0.82 -3.1 253,474 - Atu3236 0.87 +0.4 253,584 - -0.7 253,688 - +0.4 253,766 + Atu3237 0.16 -1.0 253,892 + Atu3237 0.31 -0.1 254,074 + Atu3237 0.53 -1.5 254,165 + Atu3237 0.63 +0.6 254,175 + Atu3237 0.65 -1.4 254,212 - Atu3237 0.69 -0.2 254,271 + Atu3237 0.76 -0.1 254,431 - +0.5 254,463 - -0.9 254,468 + -1.2 254,582 + Atu3238 0.12 -1.1 254,590 - Atu3238 0.13 -0.5 254,590 - Atu3238 0.13 +1.1 254,597 + Atu3238 0.14 -1.7
Or see this region's nucleotide sequence